Scaffold Ga0244775_10003856

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10003856
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15849
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (18.92%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013533	Metagenome / Metatranscriptome	270	Y
F017142	Metagenome / Metatranscriptome	242	Y
F018882	Metagenome / Metatranscriptome	232	Y
F022655	Metagenome / Metatranscriptome	213	N
F095378	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000385610	F017142	N/A	MTYSELSKMNIEELKTLNSQIVSLIKLKRYETTIETKSELRVGMNVSVNHPKLMGKQLRVEKINRTKASLKVLNGFGSYNVPISMIQING
Ga0244775_1000385612	F018882	N/A	MIDLTKEMAWITFFNDGWGKKWFPILDPITGQQLEFDDTIMDRCRAQYNGAHGGVWTYFGIAPTSQMLMGNDVRNNL
Ga0244775_1000385613	F022655	N/A	MKDMMMKEKEKIAKELFGDLVDTCESCEKNLGVWTENPFEADVRNVTVMEFLCKECHHDLMMEV
Ga0244775_100038562	F095378	N/A	MKTILIDELVKDQSMTEQLSVVIEGKMFEGWQIAKPLNYNKEYTTLKDRFVMARKVLFGNAIAVQYFTDLTEDEKISYVKNQINTKEK
Ga0244775_1000385622	F013533	N/A	MKTVESFKETYGEPKKAMLMDLTQEFISAYHRHGVDPFELVDGFGIDWIQLLLKHNEEIEEYELCAIFRDLINDYKNK