NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10003810

Scaffold Ga0244775_10003810


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10003810 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15956
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (82.86%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001097Metagenome / Metatranscriptome780Y
F002707Metagenome535Y
F010837Metagenome298Y
F014365Metagenome263Y
F037203Metagenome168Y
F048999Metagenome147N
F054866Metagenome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_100038101F010837GGAMGRPSNPSTKYFQRTLTNPQRMILLAAGKGNLCRGFENVLDVYQEAHNKGFRPDMPLSFLNIGHATTSSPNSDQSIDKVREHIRE
Ga0244775_1000381010F014365N/AMKTFQIFKNVSYEYFIEAETLEDAQNKIIEENPDYESEELIEWVFLDEHDGADWKYEPVLQAS
Ga0244775_1000381018F001097AGGAMNFQWPTNDTSRIRTLQKLRSPRVDTQIQPKEIDDWLNQSIALVAGSVRGLGTNQRRVRYFGFERPHEQTEG
Ga0244775_100038102F037203AGGMTKKNWFATLSEALEAENLSHAWPCTPISYGQTIGLTYDDGTKHGHYISIYRCERGLYERPVHYKRG
Ga0244775_100038104F048999AGGMLTITLHQKTDNDGWQTIKSLPIDSSQWGEIDRSWISTLIELGSMVITIGHTMYSIDKN
Ga0244775_100038107F054866AGGMPKYTIIHGSIAAVQYVTLPDGDKVIVTDARDGSEIELPKLPLEVQAAVNRQFGTIFALPYDSRQGFIDNSIPFDVEVTE
Ga0244775_100038109F002707GAGGMSQIEALTQCLVLALTAPTDQKAQMAAELAEQIAHGLTKKQVNQCKQAAIKLWGEV
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