Scaffold Ga0244775

Basic Information
Taxon OID	3300024346 Open in IMG/M
Scaffold ID	Ga0244775_10003808 Open in IMG/M
Source Dataset Name	Whole water sample coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024346 Open in IMG/M

Scaffold ID

Ga0244775_10003808 Open in IMG/M

Source Dataset Name

Whole water sample coassembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15957
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (18.18%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

15957

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (18.18%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Taxonomy

All Organisms → Viruses

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	USA: Columbia River Estuary
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Columbia River Estuary

Coordinates

Lat. (^o)

46.234

Long. (^o)

-123.9135

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015852	Metagenome / Metatranscriptome	251	Y
F053137	Metagenome	141	N
F060835	Metagenome	132	N
F071094	Metagenome / Metatranscriptome	122	Y
F072852	Metagenome	121	N
F074810	Metagenome / Metatranscriptome	119	N
F082556	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000380811	F072852	N/A	MTDSQKLLGGRGCKVLGAAAHTSLTGYAFVAQEDTVVTVFTVGTTDSLAAYGLSTPLKAGAYIVVPTGESITAITLTSGSVIIYNQ
Ga0244775_1000380816	F015852	AGAAG	LGRDIAIHLVKVYTPYLLAFLLGVIVAWQGCNSEAKTITKVIERPVPTIEYVDRWRTDTVRFVSKELVTRYDTIYSDKIVIRLDTMLLIDTFKIVETWLTEVANYDTTVNDIRLTWSNYQNRTENLKVQLRKKPLGWALGVHGLVGLQSDFVENYTPLFGVGLQATIKRTYFSANYGFNGQHFVGVGVGRNIINR
Ga0244775_1000380817	F060835	N/A	MIYHTNPITREAIDKLLQKNASNQANLGTESTDLERFEVKIKWAELLREIRSLDAEFADVVQAQ
Ga0244775_1000380819	F071094	GGA	MIIFLLTVSVCLLLLVVGMLLYIGYKVSELERTQDVIFDAAVSAEERNREIELNQEAILNAYSRQN
Ga0244775_1000380827	F082556	N/A	MIVKLTIEQSVYIEIDGYTYYIDHSLEEPIVEMWKDKETEVVTLLPEEND
Ga0244775_1000380831	F053137	N/A	MNEQHLKALKCMVFAQSFVEALDDFGGNRAFKHQLKNKGNAFAKEVDKFLNDTYSKGSTDTSIVNLIEGCQDAIDKLVEESVTVTE
Ga0244775_100038087	F074810	N/A	LINIERNSPNEIALTLKERGTATYYLFKFQSDNTEAVEYCIATDSSAFPDRYNRFTITEQTSPDNLNAQVEMTTEGQWRYYVYANVSSSNLDPTGLVELESGIVKVTGTTTPVTSYSGGNSNYVVYGS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0244775_10003808

Overview

Ecosystem & Geography

Associated Families

Sequences