Scaffold Ga0244775_10003798

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10003798
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15978
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (66.67%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000868	Metagenome / Metatranscriptome	853	Y
F007921	Metagenome / Metatranscriptome	342	Y
F011394	Metagenome / Metatranscriptome	291	Y
F026561	Metagenome / Metatranscriptome	197	Y
F036238	Metagenome	170	Y
F063705	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000379819	F026561	GGA	MSDINGTGMDAPANPTPSGAVTSREATRKNPKQGLRPGIKVDTNRHGIRRETNLVPTPPKKFGRKKV
Ga0244775_1000379823	F007921	AGAAG	MIDWLVNKLFWWTPLRNAIFDEVHMYDELRVRIEEYKDTNPTNLTWAEGDTWYGWTYNPEKNRYYFDDIGNVSLMGLWEDQWAREKEVGESK
Ga0244775_1000379831	F000441	AGGAGG	MSDRYVNDQLDKAQKLLWGGSETENIEAHNIIAKLIKDREDLIEHS
Ga0244775_1000379834	F000263	AGG	MTISDDMFTDKESLVLPPHLQRMVDAGVTGLDIMHGELKNLMLIAEQELADAIEREEETEEAMDSMDRTNAEGRLDMLVELYQLTYQLSFAIGARE
Ga0244775_1000379835	F063705	N/A	MKIHLISLNQDLEDARNNAPLNEDEYHESDAFYMGAIEATEHLLSVANDIMNSTNERYNNDNI
Ga0244775_1000379837	F000868	AGGTGG	MSFLENENEMVIDATYSEIGEMLVEDWVNANLDEGQLYADFRFAEMSDSNYLKGRFNLFYDLNVGDQYYLECEEE
Ga0244775_1000379839	F036238	AGGCGG	MGDRANFAFKQSDTNTIVLYGHWAGYNMLANLAMAVDKARGRWADESYATRICISQLVGSEWNTETGWGMQVNSISDNEHKIPVINWGTQTFSLHEEAPHSFDSQIRGVNDEPIFTMSLDNFVKKYSPALV
Ga0244775_100037984	F011394	AGGAG	VFIDKSSDKEKEHFKYGINQWTGEPNKPVFYSKEMAQKIRELKSPAPGLQMDISKRPDFLTIVLYEDNFKQYDGSLKMRIIDYVEMVKKIIESYGVRCELEGRPGERISR