Scaffold Ga0244775_10003517

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10003517
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16607
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005089	Metagenome / Metatranscriptome	412	Y
F021974	Metagenome / Metatranscriptome	216	Y
F022640	Metagenome / Metatranscriptome	213	Y
F029416	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000351711	F005089	GGA	MNTTDLLDSIKLSEQLALENYQQRNGVVDYRLPGVCHHYFAKYDLQGTRDGEICLTCKVSKTVKGSLRYTFQINGKRIAEKQIAAEFNALGAFCD
Ga0244775_1000351713	F029416	GGA	MKNTQMTNQDLSKTIYRNLFTEEQWDMIYNFVGHALDDDDFDAEDVYAIRNKIHALFN
Ga0244775_100035174	F021974	GGA	MTNTNIVSEIYSYHTDWKEGKVNQMWIEQSGDENKGYSYVAVAHNPRNGKTMEMSNPRTSYQETLKWVRGWCGTFCTLPA
Ga0244775_100035177	F022640	N/A	MRIAFLIATLALGLRLGLSAHATVNEYQEQQADRFCQIDPNYCN