Scaffold Ga0244775_10003386

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10003386
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16963
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (82.61%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002260	Metagenome / Metatranscriptome	577	Y
F003807	Metagenome	467	Y
F011761	Metagenome / Metatranscriptome	287	Y
F023848	Metagenome	208	Y
F026558	Metagenome	197	Y
F040626	Metagenome	161	Y
F058146	Metagenome	135	Y
F101171	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000338612	F002260	AGGA	MSVPYQRISNATAQDIAFYDPAAERRAAALGIDWAPYFKVASQEWLYKLEFGWWNKYCDTVLGAYYYSNLPNGALISSFNPSQLIKNDQTLIRLDTFGAVLVFYESLVTEVSNMNDVDKMNYDFAKDRCDREWIKALELMNFYDLYQNSPNGPTTKLEENWTADVDYFNGDRRFF
Ga0244775_1000338613	F011761	AGGA	MAYTLGGSNGEGFGFTFAIANFALRAMHESNGLVNMTNVVTPTQGNQFLVPNFAPITYQDFNPSASPATAPWGTGNAAVQNPSLTQETITASPAVATTAFDIFYGWTTSFQLAATLGAELGDSFAEKVDQRVAAAFAEFKATPGNTFYATSADGFNRILQLGAVELVPSGASVSGGTAGFTANLVTEAIRLIKQQFKIARMPGAPVIVIDSNGNDGVIGSTLNRLLSELTGGAVSQSGGANLSALGNELLSSGRIENIYGCMVMSTTFLGSASRTVAGAAATPVLVGGYFGDSALFTVMKQGLEIKLGEVPGGLQNWLTGVGYFGSGVGDMRRGGAINIVQA
Ga0244775_1000338615	F026558	GAG	MKNSDLLKRSGIYDAILMQMVGYQNAYLGGYVFKQSVRKKRPSEDSQLWNDLIKNTVAQPVCRYIVDTINDVLFEPGVKRNLKFATPDGRYIDPNNCDWVDLFINDTDLQTRSLTGFMEQIGDLTSIFGHCWVAVDMPTESEGSLGRPYACAISPLNVWDWEFDFYGGRPILKHVKIKEMEDEHNYYLKCYYLGTQSEPSYWESYEVPKSVKESSLMENEARKIGEGVFPAGMSIPVFIAYGRKDPRQLDLGVSDIDSASDAMREHYKLECEKYTALQFAHTIIRADKGISIPVHAGAIVRALQGQVEAISVDTGDVDKIIKAQQDILEQIEALTGLGGLRNSKNQVASGVSIIEERKQLHRTAKSKARLMEVTEGLIFTFAARFMGMRWAGQVNYNTDYEAHDTNYRMALITQASTLVGDNEIIKSLITREIIGMLAPADDIEEYQQIYVDSLTDSSVKELMTYEDEQIIMTDTGSIPEVENYGEIDTESDEKGDQNNTTLLGGSGTPITPMGPSYYTQQAVAVQITGLNTGR
Ga0244775_1000338617	F023848	GGA	MNQIEIPLYGEQNTILADWLNTDKHNIDIVPVGSGKTFLAAIALPIFASNPRYHRGKDIIYSAPTGAMIKSLIWEPLKQSCIHHFGLVDGKDINNSELTIKFPNGCFIRCKSAEQRENLRGLNVGVWVADEAALYTQDTLQEITNRLRPKVGQPDTFGKLIVISTPNGAGPLYDLFQLAKDMPDKYIVRHFNYIQMRSGNKEFIEEQKRIISPLKFQQDYMCSFENVADQFYYAWDKNKYCKEIKDLGYDLYTFHDFNKRVMCATVAQVKNAGEPHGTIEILKSYAIPDCSTEGIAQAIRLDFPKRRISSVIDMSGTQVNRDTTSPFGVTDRTIMEKYGFTIVNTRKSNPLISDTDNTSNAFIARGGLVVKPDDKFLLDALQTYHYEDASRKKLVKYSESRYAHIDGLGDCIRYGIHHLFPITHDTLNFPEYVGMDPAKARLGSPGLNHMPDSPLYPGGPSWEEIMTGDDKQDDYQVWS
Ga0244775_100033863	F101171	GGAG	MEIIPAVAGNKTNINSAEFIKLTIYNDVNNPTDISVYTFSSSYKEETINFQTYSPMGGLLAVGIQQRDIRVTSADTSLMLSGISGDNIYVVLANKIRGSRIDITRGFYNNQFVLTSTAHRFTGIVTSYNISEERHDLVDNYTVTLNASSFRYVLENRIAGRKTNKESWQSFYPNDGSLNNLYSISDQQFDFGMAVTKTTVTGSTASTDASQVGTNQARNEQP
Ga0244775_100033867	F040626	N/A	MASILWIDSLGKRYGMLPSEVISRANTFDLYIMDAALTFENYHHKKAMNNGREPMPDYNVDELQQMMNKAKETLNG
Ga0244775_100033868	F058146	AGGA	MKLSELTAKPKLVEITIDDEDTIKEFGEAITFHTWDRQPMDVFMRLANADHSNTGTIVEIVRTLILDDKGKEILTKDNVLPTHVLMKAISKVTDLLGK
Ga0244775_100033869	F003807	AGGA	MNEYLKTSEEKLRSLLADEAKQMPMLDNMQSTIRQLKAKQAFRIALLNQLLEDGIDNE