Scaffold Ga0244775_10003107

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10003107
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17796
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (92.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009801	Metagenome	312	Y
F021263	Metagenome	219	Y
F022373	Metagenome	214	Y
F046865	Metagenome	150	Y
F052582	Metagenome	142	Y
F087179	Metagenome	110	Y
F090062	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000310711	F021263	AGGAGG	MTNEEREMDLNIADLESENRRLKKIEQAAQVVVKSFTNSIDYDTWDKALDALEATLKEKL
Ga0244775_1000310717	F087179	AGGAG	MKYSQSKPLVEELVTIAIIFHGSPTMLRTKIADAIDKHIPDLDPACMERGCTAIDNFKEPNT
Ga0244775_1000310719	F052582	AGG	MSKPKTPEPLYRQFTPEEDRGKTMVSKYYRVNQNMDGLGVSLHPYLVECNIRIDFGLDGGIYKVEWSNKILGERNERTKFKHMGKSAGVEKTADDHEAT
Ga0244775_1000310720	F046865	GGAG	MIMKQLDPISNQIRNNTLEEVAKEFDQMKNGGDTTASFASYVRSMKK
Ga0244775_1000310722	F009801	AGGA	MNECKKEYCEFIGSKAFEDDGGWSYEVWTAAQQAAFKRIATRFAGYKDIDYTGYEITRYVNYLAKQDVPE
Ga0244775_100031075	F090062	GGA	MLTTEQLRRKARKIYNNDMAPEHINRHNQRKWVRAVLRLGDHWLTAKPIGRLDATQSNP
Ga0244775_100031076	F022373	GGAG	MQPKVILEFNYPDDEDGLLFAIKGPEMYRALTNIKMAVTGEFTHKADMAVALARIRDLTDQIFTELGE