Scaffold Ga0244775_10003066

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10003066
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17938
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (67.50%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004133	Metagenome / Metatranscriptome	451	Y
F015601	Metagenome / Metatranscriptome	253	Y
F024558	Metagenome / Metatranscriptome	205	Y
F030759	Metagenome / Metatranscriptome	184	Y
F035768	Metagenome / Metatranscriptome	171	Y
F039639	Metagenome / Metatranscriptome	163	Y
F054039	Metagenome / Metatranscriptome	140	N
F076099	Metagenome / Metatranscriptome	118	N
F078723	Metagenome / Metatranscriptome	116	Y
F080054	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000306610	F004133	GGA	MKYTKEITDKLIAEYKSGISVALIAHNLEVPERSVIAKLSSLGVYTKKSYVNKRGETPVKKSEHIERIAELLEVNEELLESLEKVNKTVLKLIENKLSQTATESDLLEVN
Ga0244775_1000306618	F035768	AGGA	MKITVEDRLIASYTAQRLRLRDREDEDYRARVESEVFQKIIIDRVRRNLRLDLDKGTNVDLDV
Ga0244775_100030662	F076099	AGG	MYQVNKGINVDYAETLIRDFLAEGLNLYEIMDLMHLPLSQILDILTRRTH
Ga0244775_1000306621	F039639	AGGTGG	MNIDREFIKWFYEAEYPQQGSNRRQSYGMTAGTTNINTIDYWMREAFRAGAEAATHGYEVNALDQFEAFNINRNYPL
Ga0244775_1000306623	F024558	AGGA	MIVILYTEDFEPIIPIDLPLWLLDRLEKEGGVRVAVNRPSGFTEEQIPVGNLECEAPTVRIRYEKLRWRDDSLKTILVTPDEELALTLNPEWLPGQRAPLQTYVGAMRKLHEQLIKQIRKNQD
Ga0244775_1000306629	F078723	N/A	MSYDILINSLVNGESITVTKPDGTTFTEPRPPNRTALAAAKAIQNLQNQLNFGTVAINQLTNERNELMDSITRLQEQNKRLQDEINTTTSTTTSADGNSDSPSTG
Ga0244775_1000306630	F080054	GGAG	MSTQPNYTAELEALILDVLLPVYEQHCRQRGIPSLRSEINPELLKQLKKKKTIPRLFMPKTNNKF
Ga0244775_1000306632	F054039	GAG	MIDISPNYKRLAKVLNKTRKSLTQTCHELGIDVDNIEDHLLIEIIDQCSHCNIWSQQLVKDLDYNPVCPTCVRLTGL
Ga0244775_1000306635	F015601	GGAG	MAGYTKEFLIDAFMSRYVNCDHLSIEKLERLEMMANDLYDRVGRDSFRVYCCLDAEAIREYKNKATA
Ga0244775_100030666	F030759	GAG	MIFNIIKLLNIVSWIGTISSIIGAFIVASKLFFLGYCFFIIGSLSWLLVGYYRKDKSLIVLNGTFFLANILGLFNSF