Scaffold Ga0244775_10002903

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10002903
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18417
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (50.82%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004134	Metagenome / Metatranscriptome	451	Y
F004255	Metagenome / Metatranscriptome	446	Y
F010681	Metagenome / Metatranscriptome	300	Y
F019061	Metagenome / Metatranscriptome	232	Y
F034857	Metagenome / Metatranscriptome	173	Y
F047660	Metagenome / Metatranscriptome	149	Y
F063620	Metagenome / Metatranscriptome	129	N
F072267	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_100029031	F072267	N/A	KIGYKLNPKKLKGAPQIILPYFVGAFYYTEDFEYFDVIKPYLDIPEKPKTLEEISQEFDEKIDDLIERTKNSFYKSKYIAETLYDTKFNKIIDNFEYARENGSFPTKLDYSKLTATGGNITSNFVIKEGGKEVGFYTFGNGYLKYYMNKKPTAIVRFFMKNCLSFVWVDV
Ga0244775_1000290315	F004134	N/A	MTHPTKDWEFDDTIEVAFQEWFNEEYGNFTFRCEWFFGDCEVGDVKTRKDLMTKWLHSSFLMGYNTGRFSKTDD
Ga0244775_1000290321	F004255	N/A	MTEKSKIFHNIWCCAYQRRGLYKGTAREHREHETVRMCLDMKDVKFYQFDTEKPNYLK
Ga0244775_1000290329	F010681	GGA	MKLTPNQQLWANVFSCAVKRSNECFEQKDLDRHAREHTTVVLALQKGEQFWTKLL
Ga0244775_1000290330	F034857	GGA	MIRKFIQWFFAPSKVPIVEEVDLYAKIVELEKRIADLECENIENSNCFYELSNHIDAVDARIDILSVEAFTKNV
Ga0244775_100029035	F063620	N/A	MTNSIIPKVAYIPLEYHMSVEDFLEVWKDMEMEEEPTQEDYDTAVLDRARSYFYDMRGLFEKYIRLEDA
Ga0244775_1000290350	F047660	GAG	MNYIQIPDFVLDSIINSLQQGYDVCAGVDYSSDETEKRPEYATGYSRATMRDAIERLKQYQEKTN
Ga0244775_100029036	F019061	GGAGG	MTNEPTDTEILEFLLNQFQSHSLQMNGESGWCFMNGGFPMNHAKGKSARDAVINAMRAK