Scaffold Ga0244775_10002870

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10002870
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18528
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (12.90%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000918	Metagenome / Metatranscriptome	834	Y
F010928	Metagenome / Metatranscriptome	297	N
F060924	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000287024	F060924	AGCAG	MGIGTGIGNSIPRGITGNAGIPTPFFEILAENGDFLIAESGTNPTFLITEQQ
Ga0244775_100028703	F000918	N/A	MYKTNQQAWNEVMSGIKESERRTKICIEMFGQENLIGLSDDQRELFWQSV
Ga0244775_100028704	F010928	N/A	METQRFMGSGQLVDRLTAQVRDKGFAIALLKKRGDMTADGSLTAKGQARNRMTAEERALDRAGETSASATYNPETNRVTKNK