Scaffold Ga0244775

Basic Information
Taxon OID	3300024346 Open in IMG/M
Scaffold ID	Ga0244775_10002811 Open in IMG/M
Source Dataset Name	Whole water sample coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024346 Open in IMG/M

Scaffold ID

Ga0244775_10002811 Open in IMG/M

Source Dataset Name

Whole water sample coassembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18730
Total Scaffold Genes	34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (20.59%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

18730

Total Scaffold Genes

34 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (20.59%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	USA: Columbia River Estuary
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Columbia River Estuary

Coordinates

Lat. (^o)

46.234

Long. (^o)

-123.9135

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010620	Metagenome	301	Y
F010918	Metagenome / Metatranscriptome	297	Y
F013186	Metagenome / Metatranscriptome	273	N
F019139	Metagenome / Metatranscriptome	231	Y
F037224	Metagenome	168	Y
F072337	Metagenome / Metatranscriptome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000281123	F072337	AGTAG	MKKYRVWLEDIMEPEGGSWWECFLGKDGKLHDYIYTDEQADTPQWYIDNGYKVEEL
Ga0244775_1000281124	F010918	N/A	MKRFKVTYNYFDGGKKRIAIRILEALDRDHAIMQMAMWPKLILKVEQYEKI
Ga0244775_100028113	F037224	N/A	MHSDTLHKIQVVQAYIHHKTGKQVRIVFNRPDRMQQHLMMLDHAYLIAMGGFKNNNSNDANIGKEK
Ga0244775_1000281133	F010620	N/A	MPTYDSNARELMRYILPIIALCLLGSCSDAKKAQYHYKKAVKFGLQIVQDSDTIRIISVDSVPVVVNDTIIWEKVIRTKDTIINFKNIYVPKTKWQTRIEYKYKTQILKQDVLKYKYIYKEAKIQKSKTNWLLFIIGFGCGIALFFILRLLDKLYNPFK
Ga0244775_100028117	F019139	N/A	MKTKSEHLGKYITMYNGNFETSFTVTEETAKDHKYYTSKGLGYLFEESTPKVKYKGVENEKAD
Ga0244775_100028118	F013186	N/A	MKKALDNYISRAYPEVRAYTAYFLSKMGSYIDADTVINNSYIHVLTINDYTADEDKVKGYLLNTIKYQILWSTSKSHKDDRVTAIIDNSPDRIEDDELADKIREDRTYSFNKGLIEIYRSEIVDQVQRIVFEAYIDKGYITSRALATYFGITHTSAYYLIKELKQNLNKLQYRYEVEPCY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0244775_10002811

Overview

Ecosystem & Geography

Associated Families

Sequences