NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10002705

Scaffold Ga0244775_10002705


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10002705 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19123
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (58.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002130Metagenome / Metatranscriptome591Y
F002997Metagenome / Metatranscriptome514Y
F073561Metagenome120Y
F074469Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_100027051F002130N/AMSEKPESIIDKVLTYVDSPFKLFAILIMGVVAFAGYFLWQNQTFMFDAYKESKKLPEINHARADDASSMLLKKTGATVVAVFKVNPLFNSRVLYKAYTKDGRDKTIEDIDVGLFSQNSANNADVVKLMTNEIPCGDYRYAQSEVGLWYLEKGVTFTCRVSVPPDSHRFVGQVTVGWAEPPQDIQQVKFMLEIASAMLTKRGN
Ga0244775_1000270523F002997N/AMSIARFENININNLTFTKSAFGESATVQALWFATRARVSAVSNSLKIADKYRLYQDMVNLTMNYTPNTKLIVDNQNLYSITYRGKDWRIDSVRESDDRMTVTLLCYRSDPVTAV
Ga0244775_1000270524F074469N/ATNINTVMTAPINVLYTTVSNPLSAYPVIKQAGLLLLTHLYNNRANATETRLKDIPFGVTTLLRSYKPLVM
Ga0244775_100027057F073561N/AMANFCRHKAVGVLFGRQGKIIALFSKNVISQISGFDNPLITGELVYNQRWYWNLTLLDIDNQPINLSTATITADIVRRQVSNLIDTRNGLSFDVANYSPPPSAINLTISNKVNAAGSFTLVIDDTVWNLINSDPQLNIDAQNPVCFTGKIKIAFAANSPTPAEDNIIFLMFLVRSDGVVV
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