Scaffold Ga0244775_10002671

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10002671
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19240
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (87.10%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000220	Metagenome / Metatranscriptome	1544	Y
F011223	Metagenome	293	Y
F018367	Metagenome / Metatranscriptome	235	Y
F036230	Metagenome / Metatranscriptome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000267111	F018367	GGA	VIDLLASAQIPWPNTETKIVLVCRVVLPSEKYGANEFLDKDGRVCRWVVEAVKKERHD
Ga0244775_1000267113	F000220	AGG	VSEENLNANSTLDKVLGYVDSPFKLIAILIMGVVAFAGYFVYTNQDLLIGAYKESKKIPSIAEDRVEDASAHLFKTTNATIVAVFKVNPMFGTRVLYRAYAKDGRDKTNDGLDVGLFTNNAANNADVVKLMANEIPCGEYRTAQSEMGIWYINKGVTYTCRISVPPEPGRFVGQITVGWETEPENLESARTMLSIAATMLSRSKQ
Ga0244775_1000267119	F036230	AGGA	MIKVGDIVQVDPNFETFGACMVVVTEIKDWGIQGYVQSAGVGGQQYIRLKTEQFEPTGGKAIWVAQ
Ga0244775_1000267125	F011223	GGAGG	MSKIKIQLVEDEETPTVFERFWDNLMVFAKCLGVFAAICFALGYFTDTKAQTKQCEPTKTVLARSIFK