Scaffold Ga0244775_10002609

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10002609
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19441
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (14.29%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (23.08%)
• Associated Families: 13

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004154	Metagenome / Metatranscriptome	450	Y
F005349	Metagenome / Metatranscriptome	403	Y
F006547	Metagenome / Metatranscriptome	370	Y
F014139	Metagenome / Metatranscriptome	265	N
F018001	Metagenome	237	Y
F019478	Metagenome	229	Y
F022886	Metagenome / Metatranscriptome	212	N
F024555	Metagenome / Metatranscriptome	205	Y
F025032	Metagenome	203	N
F036239	Metagenome / Metatranscriptome	170	Y
F037728	Metagenome	167	Y
F038242	Metagenome	166	N
F053288	Metagenome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000260912	F005349	N/A	MSYFVHKQLIPADTATGDPNWSKRQIWVLRLNQNDTIDEFETIEEAQTKVGVLFNEDPTGRIYKVVLRNSDGTFSDI
Ga0244775_1000260914	F004154	N/A	MSKVKYYILRYWVAVIFLSLAFYFYEPLQSITHCSPDSLITDVEPKTILGLGEMSWMWILMAIAHSANTCYCDIKSLLKKR
Ga0244775_1000260918	F025032	N/A	MISIVKIMEGESNVDKFTFKQRDGGGVRPSYQNTKLVKQGTAKDYVKYNVMVMGKFGGTIYYNKTDKSIIASGGESNTTFPPKRFKSIKDAIDYVGGNSTRSYNTNIPLDGMDTSFGTARYV
Ga0244775_1000260922	F022886	GGA	MITIKNWDKLTRLFRSQIDIGELELYYEIIYYYPTLPSNEYYRITLSRISPPQQDHPHRGEYLMLCGVSEYWLNKKELEDVDSVYEAIVDVVVRHNLKVKV
Ga0244775_1000260923	F053288	N/A	MITIKNYNSDVGHGTFYGWDMKYALEDKDFYSFEFEHRNEQKRVYVLVHRNKLKSKKRTKHLVVSEDLHEVYIQDMVGDTWRRTLNLTKPQLHKSAFYNWVESVIDDEYGLPF
Ga0244775_1000260924	F036239	N/A	MRIKGWEKISGYTYKGYSIVNPIHDAIEEGYFATVLNLNQVYKPKWDIELTTNDTTGVITFRILDNVTQHLLAKSHLTKPNIETLQKFREQYEMLVDDILEEAQSYVKKATTNINGTTGIINQVQSASTNVLYGSSSLSTTTPAHLIQTLQTLQQQIDDYNKKL
Ga0244775_1000260925	F006547	GGA	MKWIFIFLFPVLVSAQIYDTTYQMIYYQKALLKKRKFEFYLYTSYDLWWADESGVGLLYTLPNKRKRKKK
Ga0244775_1000260927	F019478	N/A	MILKIHNTNRMVGTMFWNRRFTCLQVHETDTNYRFQFDDSEVPSRYVWIEVSKIGRMDSDGDWVYSLNYMRCNQHSITAKWFEGWHNVTKTFGDALKKQF
Ga0244775_1000260929	F024555	GGTGG	MQLNNMLTIKNIEKLYKLYVGDWKVGKVVTLDSSYLIQLYKRNRRETMQVNIERTPIGEGDTAVYELWFWEDNSGGAKPIRSFLRKSNFELGPLYVIKNIENMMTLK
Ga0244775_1000260930	F038242	N/A	MLTIKNIKELELNFCHQRGLREITETQNKLSEQFYSFHFGPISDGNGWNKETEVRLGRNLKGKDYEIFVMGLHLVTRHFVTIDDVKTKGGLASEISKVLAKAEHWWKTDATK
Ga0244775_1000260931	F018001	N/A	MLTIQNIGDLTGAQLNDWKVLTAGKDNRPELGKNIYIITFARIDNKGVMQDDRAGVIIDRNINPLLKGYHIKIVYESWDYEIHTTTWPALTIKGKDAFFGMILYRINEEYYKRNSK
Ga0244775_1000260934	F037728	N/A	MKRLNITNFTNRVMEIHSDFFEVGYCSNGGDRYLIGLDIKDVVSFNPLSSKHYKMSIDKVTNEDGNYGIWLWDMGENISYPMSIMPDNISSVSEFTSFLNHTLKLANEGSFSGDTGNRVG
Ga0244775_100026099	F014139	N/A	MGMLKVNWKKYLNSSNPTINKYLSAFGDSFIRQTLQRITLAHQKRKSQIILIRFKQSDIVATIESKDYVLALKHLLQLCINLEKYELCREIHTTINLIKNKRRVRIKSNPLVISS