Scaffold Ga0244775_10002488

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10002488
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20008
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (63.89%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008244	Metagenome / Metatranscriptome	336	Y
F019830	Metagenome	227	Y
F019833	Metagenome	227	Y
F026563	Metagenome	197	Y
F029752	Metagenome	187	Y
F035769	Metagenome / Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000248813	F019830	N/A	MTKRIGPITIDSETADRITLLNLKEYKSYLTKELTAWRKNPQTEDNPNGVWLHPEDVTGNMAAINALNIIIKHFSVEV
Ga0244775_1000248815	F029752	AGGAG	MNRDYNNLQYILNKTPEELHKWWYSLDDEDQAYAMEIIVEYRKMLDEPLVEDLSLASNLLKQFML
Ga0244775_1000248827	F008244	AGGAG	MFNTATYAFIDGVSDFKKKFVEQTVQHEGIKTALNGFIDAQSKYTKQAADAGMQSMMSLGMIFTSKDFYTEMGDQVKAMVPAFNIAKSAKSTKAK
Ga0244775_1000248828	F035769	AGG	MKKILGMLLVFLGFSTDTYGTELEKYIVSRNPKDAGDIERLTYEFHRKQSDWRFL
Ga0244775_1000248835	F026563	GGAG	MTEKVELHCTQDDDGTWMVWFPHPLGGMDVLETFDNETDARAFHKDQVDSAEI
Ga0244775_100024884	F019833	AGG	MYELRYLVRNGWDGPEKVLQYRTQSEVTDYGTTTLNGSFTKKREWTEWQDVPTVKDK