Scaffold Ga0244775_10002434

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10002434
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20281
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (17.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009843	Metagenome / Metatranscriptome	312	Y
F019648	Metagenome	228	Y
F032280	Metagenome	180	Y
F046021	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000243419	F032280	N/A	MADEITMKAINLLREADPSMDELDSLDKFIAHQAEVVEMYKQFKDHPMANKLKPRLTVFEESAFAFTYVYTMMKTYKRERMLANARELEMANAVIELKQELDILTKLDKGD
Ga0244775_1000243420	F019648	N/A	VTKKELNLLDRFASKYKIDCVPSEGKYDFWDFTYEWDDRKFYCEMKQRNFTLDFARDKYSEGILLEMHKYERILKRTKNEKASQGLYLNFFDDDSVLVYNLNKVSIDKWFWKTMPETTDFGRRNFIYKYITFLDYDKGKVLYI
Ga0244775_1000243421	F046021	N/A	MTNKKLTPKYNENKSIRDKIDVLLEQNASNVANSGTGSKLDIGDDSKVKEAWGIIQVRIKDIDPVFYDIIKER
Ga0244775_1000243434	F009843	N/A	MKKVELGGQERPIRFSYLALKDICNKCGLKLSEMNQLGSEIDHIGIITYYGLKAGAKKIGEPFKYKVADIEEWLDNEEFNKINEIFEAFQLDQPQNEGK