Scaffold Ga0244775

Basic Information
Taxon OID	3300024346 Open in IMG/M
Scaffold ID	Ga0244775_10002419 Open in IMG/M
Source Dataset Name	Whole water sample coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024346 Open in IMG/M

Scaffold ID

Ga0244775_10002419 Open in IMG/M

Source Dataset Name

Whole water sample coassembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	20356
Total Scaffold Genes	40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (80.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

20356

Total Scaffold Genes

40 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

32 (80.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	USA: Columbia River Estuary
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Columbia River Estuary

Coordinates

Lat. (^o)

46.234

Long. (^o)

-123.9135

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002977	Metagenome / Metatranscriptome	516	Y
F003080	Metagenome / Metatranscriptome	508	Y
F019762	Metagenome / Metatranscriptome	228	Y
F024559	Metagenome / Metatranscriptome	205	Y
F043407	Metagenome / Metatranscriptome	156	Y
F073563	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000241914	F003080	AGGA	MTTAKDLTDHLIYRAKNLKEFVVEREWESIPAGIVRFNIQHTQGNLARLFVPALTQTEAEEMVDEWFEEDVE
Ga0244775_1000241915	F073563	GAGG	MNPKYLYTIKWTQPYATYQMRPYLRHLRNEYETQIETRLVRGEFDDAKKVIERIMSL
Ga0244775_1000241917	F002977	GGAG	MKAQIPAEGIMKTNDWGDSRVYRIACNCGDEDHNHNMWVEADDSDIVVTIYTTGKTNWWSKKRWYHIWTLLTKGYIDTESAVHLTKQQALNYASVLQLAISDVEEFRKEKNVKN
Ga0244775_100024194	F043407	GGA	MTTTLKNVKTVNTTSPGYGAVPPGGIGVSPLTIGQVYTTSGTAGQFLTSGSNGTAWSNSNDTVLKVTQSPPELEVKGRLVLNGVDLEERLDTIEKVLQIPERDVILEKKHPKLKKLYDEYITALGKYRTFEAIKGEDNVA
Ga0244775_100024195	F019762	AGGAG	MLHESVSHTLKEVTIKESEGFRVRLVKHEVISPKGLFSLDIIQESLKDGKVQDSQAYNFFMTKEELQTLAHGLTA
Ga0244775_100024197	F024559	GGAGG	MTSALIKLILGIALIVIVIVFGPIVGIWSLNTLFPVLQIPLTLETWCAFFLLFGSITGLRIGTNK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0244775_10002419

Overview

Ecosystem & Geography

Associated Families

Sequences