Scaffold Ga0244775_10002324

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10002324
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20854
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (74.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004450	Metagenome	437	Y
F011669	Metagenome	288	Y
F018719	Metagenome	233	Y
F049420	Metagenome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000232411	F004450	GAGG	MNWLAAGLVALVMSAAYLLDGPSEHEARVDTVEEKIQRLCGENAGWKMLDDKSIQCFTHRGHKTKKVQL
Ga0244775_1000232418	F011669	GAGG	MDDDEDYELANLMYLIAKIILALFAVTGIAGLAGFVWGML
Ga0244775_1000232423	F018719	N/A	MTPTFATWDRAVLDKFALEAYLRMRKQQDQLEQLRNDLKDAIEAYPAVIRKAEFPDGQ
Ga0244775_100023245	F049420	N/A	MTFKNQLMPVKEPLDGGKSDLLCSVDGCNSRWSVRIDGQLPKCSHHQWQQPKVGNTKTYQQYLADKDSPGLPPVSTWYNKEPW