Scaffold Ga0244775

Basic Information
Taxon OID	3300024346 Open in IMG/M
Scaffold ID	Ga0244775_10002167 Open in IMG/M
Source Dataset Name	Whole water sample coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024346 Open in IMG/M

Scaffold ID

Ga0244775_10002167 Open in IMG/M

Source Dataset Name

Whole water sample coassembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	21632
Total Scaffold Genes	41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (48.78%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

21632

Total Scaffold Genes

41 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (48.78%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	USA: Columbia River Estuary
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Columbia River Estuary

Coordinates

Lat. (^o)

46.234

Long. (^o)

-123.9135

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F068824	Metagenome / Metatranscriptome	124	N
F080908	Metagenome	114	N
F081331	Metagenome	114	N
F084229	Metagenome / Metatranscriptome	112	N
F097318	Metagenome / Metatranscriptome	104	N
F097332	Metagenome	104	N
F100402	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000216715	F081331	AGAAGG	MKELNFDTLIGNGWIQFKDFLAQSDIAFYKTFAGHEECRCNEGKKKQVEVYIYDHRKYSAVAGVGYEVKCTGELPDGTWLELKSHGLNQDHVDPKAQELLSIWDWSVKNNLTKSKN
Ga0244775_1000216723	F080908	N/A	MSEPHYASEVERLKECDKDYRSIAAQLSVFCSAAIFALRAANKDLEDAQVKAEIIPDPFAEQAIDDMFQSYLESLRDYPELMAIALKFIQQSR
Ga0244775_1000216726	F068824	AGG	LSQIRYNPTQSLKTIPAMNWTTEQLKEKGYILAPDGHYYYADNYKPPSRRLLDTLTKHAPKCSLVKVHKAKAPSKDCTAKCNPQYTLAITRYSTKTLDVDNLAGGCKPLIDQIRYAHLIPDDNPESVNITFSQVKVRTQAEQRTEVRITQA
Ga0244775_1000216733	F097318	AGGA	VNTLEHYIEYKKLNATKVMNALQLNGIISDECIFPEDVRDSGQAVYWLEYHMGEVHK
Ga0244775_1000216736	F084229	GGA	MIEPNIAQKAVSFVKSAAAFVRAGMPIRNKEQIEERLLICNQCIHYDPMAFSGAGKCGVCGCNMEIKLIMDTERCPLDHWT
Ga0244775_1000216737	F097332	GGA	MSIGSLDMTREEAQRKSNEDYIHGRISKDEWDFQFEELGNVRIWNKNGKIHQLKEEHERLRPDNRTAK
Ga0244775_100021674	F100402	N/A	MATKRNNHPAFPVPHFGGDAKTSAVKPNSGMGIRDYFAGAALRGYRASEEFSGELPEIVAELAFVDADAMLIEREKNTFNQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0244775_10002167

Overview

Ecosystem & Geography

Associated Families

Sequences