Scaffold Ga0244775_10002089

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10002089
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22073
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (9.68%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002018	Metagenome / Metatranscriptome	603	Y
F012345	Metagenome	281	Y
F030696	Metagenome	184	Y
F088520	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000208912	F030696	N/A	MNFKSLFLLILVTSCTANYHLTKAIKKGYRCDTVADTIRITAVDSFPVIVDNKIVYEYYHTTKDTIVRYNTSYVPQTRWQTRIEYKLKRDTIRQVQKIEVAKYKSQKDKPIFWVLILGFAIGMGTMYLFRYSKNQI
Ga0244775_1000208925	F002018	N/A	MISYQALINEIIAFYDAHLQVKKVGSDFKEQLFNFATKDEKYPIVYIVPIDAIPTDNTNDFTLEIYCFDIIQKDRANINVILSDCHQILMDLYLNYTFNLDDRDFDVVGLPALVPLNNDLLDYAAGWLMTITFTMDSWTDCQIPKQIAD
Ga0244775_100020895	F012345	N/A	MRFKLTYHIGPVLVQEWIFTSKGLAYWKKMDLIETGRFNDGKFKVTPV
Ga0244775_100020897	F088520	N/A	MYITTNMENKYWFSEESSNASANSIIVDVFNRYDDEQIGTIKLNYSYDKNNNYEEWTIESTEWHQDLTLQECDEAMQELLDSATDNFHEFAFECYNYDPREDDDEWWCV