Scaffold Ga0244775_10001864

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10001864
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23722
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016273	Metagenome / Metatranscriptome	248	Y
F018369	Metagenome	235	Y
F046382	Metagenome	151	Y
F058152	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000186425	F016273	N/A	MTQSEEAILISWRLQQWYEGMVLDARAMQDLQDAIEMLKTLAKQVQK
Ga0244775_1000186429	F018369	AGG	MKYSYIQLTDEGKRQLMRELSRELTDKKIAELMDQFADGVKLDANGEPYIKIDADDVENCVCPMYTHFIDVNHIETVTANEEDGNE
Ga0244775_1000186430	F046382	AGGAGG	MNKRNWPFLTDLGDSNWTGRTTRKMRCQTRYTRADERIPPIAWVVGLLMLALVFGFFPLLSLVML
Ga0244775_1000186435	F058152	GAG	MIDYSESLIKLTAMMHQYQKLVLQGKYDAAADVAVDMQIVLVDLQQWTEAQVDQSAA