Scaffold Ga0244775_10001764

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10001764
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24551
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001106	Metagenome / Metatranscriptome	776	Y
F003408	Metagenome / Metatranscriptome	488	Y
F009961	Metagenome / Metatranscriptome	310	Y
F012456	Metagenome / Metatranscriptome	280	Y
F070122	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000176410	F009961	GGAGG	MTVDYKIDAMFELRKFLWKELKDSFIFDAYDYYSDNLGKEIIPIIPVQQSPEMDQFLNGKKHIIYDKIGMSYEENWLICCEKILFTIYSTDVTEIYEIRNLMTDLFRRMDESAVDVNDQNRPSKLKFHSIHIVETSPIDPSIELKGFMSTDVILEVKYSRTTDKSGRFD
Ga0244775_1000176411	F012456	GGAG	LDSSVALIQTASGLERLMAGSVPGVIKDSTVAQISAFLYYEATVLSKLTTNESFKNLFKTTIFNQIEKDFGLYMDSQARTKPRSLHHVYEWNKTGIPSSRLFNLYAIEMEGLSFRINYNFKLSKSSVPTKNKKQKKKYVFGNKADVMEAGMPIVIRPRSAERLVFEMDGETVFMPKGTSVTVRKPGGAQASHQFSLSYGRFFGGQLVNSSIKSSGLQRIFNLKMARALGVPMNIKKVQYSFTPGKIRIQADASLDAAFGGSL
Ga0244775_1000176412	F070122	N/A	MSLATSLMPMKLDIYLQLDTQDENTGAIKKEWIFTRSVPCSAKGMISNSGTGRGGDKQTFNNKYMNEQMLEIRTPDPITYREKVTNVRDMNGNVVWKEINYPNNTPTVFEVISSTPITDPFGNVLAYNSIAKRSENQEIGF
Ga0244775_1000176414	F001106	AGGAG	MSFDTLKVAELKVIATDFAVDTEGLKNKKDIIAALAEEGVTWSVYQSTVEAIERDTEEIEILPKFDPKAQAEDTLLVRMTRDNHRYDIHGYTFTKDHPFIAMSEDDAQKIFDTEEGFRLATPKEVQDFYN
Ga0244775_100017647	F003408	AGAAG	MPEMVQTFKSMQKTEEEKRKFLALIQGVELNESSNENGEGSTFEDVRRRALGINASADDVVSLQGGLAAEAGFGVGAGLGYSIE