Scaffold Ga0244775_10001505

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10001505
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27056
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (79.55%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000368	Metagenome / Metatranscriptome	1223	Y
F015731	Metagenome / Metatranscriptome	252	Y
F020909	Metagenome	221	Y
F028173	Metagenome / Metatranscriptome	192	Y
F033806	Metagenome	176	N
F077306	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000150512	F020909	GGAG	MITKRGKRVRAIAILIGLIVVWQVASNLWWVGIDAPSAEFFGWCWGSMSECVVL
Ga0244775_1000150523	F000368	GGAG	MEQFKQITLSWFRAAAAAAIALYLAGETDLKTLGMAAIAGAAGPVLKWLDSSAVDFGRGS
Ga0244775_1000150528	F077306	N/A	MTAFDGITSPAIAVQFLKSGTWTSVTTTDVIQIDIRRGRTRQNERDQAGISVIVFNNTSGYYDPDNTSGSNPWVVSGTNILRDGLQMRIVATIGGTAYPLYYGFLEETEVNQGEAPSVTMTFVDGIAYIADAQAPALATSAFAETAATRVGRMLTYAGWAGSTSLTGTVGMLATTQNRSCMAMIYQAVDAIAGRFYISRSGVATLVPLANKFSRPTQLLFTDNQASNTVGYMQLLTNPGTYYVVNQAIVNRGEAKQYTSQYNPSVSAYGIAKTILDAPVATDSNAQNLALYESRKNATPDTYVERIDFNALAVGTYGLLYPDFLATELADQVSVVRTTYDGRTIQWNLVVEGMAHTITQNNWLVSYTTSAINPYSITI
Ga0244775_1000150530	F028173	GAG	MADDVIVLTGIKETLDALKEFDKDAVKRFNKVINTELAGAQRDAKNLISENPPMSGWRKTDPIKGKTRGGAGWPGWNAGEIKSKITKTKAQGKVRKDYTTSAGALLNKSAAGAIFEVAGRKASGTKRMFATDSGGQFLRTLGNRFGKASRVVWRVVDKDRVKIQANVNRALEEAKAQLQRELNRERA
Ga0244775_100015054	F015731	N/A	MGVNMSVESGTGVVDFDANTAAWLEQYKSAVAKIKELQEVADVARAHIERALGDNETGMFLNRPVVRYSFVESKRFDTKRAREILPSQVIEALEVVSTSRRFSIVSED
Ga0244775_100015058	F033806	AGG	MNLEKQPRDPLFSIHNHSDGHIALYLEEQDAVKDLVQDVVGAYELDDLDLLRHSADRSVKSENYFEHLDNARDNLGENAPLLCNMSEQEALILAEDLIRAVKFARIGREAQGNYPSLKAV