Scaffold Ga0244775_10001392

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10001392
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28252
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (84.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016273	Metagenome / Metatranscriptome	248	Y
F018369	Metagenome	235	Y
F026564	Metagenome	197	N
F046382	Metagenome	151	Y
F058152	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000139215	F026564	GAG	MVTAKKPAVKRAPVKRVAKPAPVRNPDFTDKVVDLIKWVDSPFKLISVVLIAFVAFAGYFAWDSRQVILGAISSKKTELKEPLLVEAITKSLIYDLSADVVVVNSVNLQSNSRTTILAMSNQGREKSLEGVINALFTSSPERNRAVITMFQGEVHCETFVPSSKLGEYVVKHGVTYMCRGAVPPEQGRFVGYIAVGFKIPPKDIIQAKTRINLASAEMSK
Ga0244775_1000139226	F016273	N/A	MSQSEEAILISWRLQQWYEGMVLDARAMQDLQDAIEMLKTLAKQVQK
Ga0244775_1000139229	F018369	AGG	MKHSYIQLTDEGKRQLMRELSLELTDKKIAELMDQFADGVKLDSNGEPYIKIDRDDVLMCAVPMYTHFIDINHIETVTANEEDGSDE
Ga0244775_1000139230	F046382	AGGAGG	MNKRNWPFLTDLGDPNWTGRTTRTMRNQTRYTQADERIPPIAWVVGLLMLALVFGFFPLLSLMML
Ga0244775_1000139237	F058152	GAG	MKDYSESLIKLKAMIHQYQKLVLQGKYDAAADVAVDMQIVLVDLQEWTEAQVDQSAT