Scaffold Ga0244775_10001194

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10001194
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30886
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (24.53%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012871	Metagenome / Metatranscriptome	276	N
F021113	Metagenome / Metatranscriptome	220	Y
F023350	Metagenome / Metatranscriptome	210	N
F027518	Metagenome / Metatranscriptome	194	N
F028175	Metagenome / Metatranscriptome	192	Y
F036240	Metagenome / Metatranscriptome	170	N
F039140	Metagenome / Metatranscriptome	164	Y
F046371	Metagenome / Metatranscriptome	151	N
F071242	Metagenome / Metatranscriptome	122	Y
F071250	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000119414	F021113	AGGA	MRKNLLFAVLLVLGTTIIWTVVCWQIFGKIHANNVQENVQKQDSVINYNAGEYDRLLAEQIELYKQLRTYEDAQLTAKTTYQRTRDIVLIRDTIVRVDVLRLVNSCDSVIASDSLVINNLKEQLNIEGEKVNNLQETIVAYEQKEDILTEQINTLNAEKKKLDKQKRRRNRALIVTSSVAVLSTFVLSILL
Ga0244775_1000119416	F039140	N/A	MKDKLKVWIKELLTSSTKVSSKRIVAIFVTINLIVLSYIATFTYYVCPIAMFDTLALLTGGLFGGTVIERFTKQKNGSTENSSEDNS
Ga0244775_1000119417	F027518	N/A	MNTETEIVLIHEQLQEMDKKIDRIYNVLIGDDQMKIEGLVSKVQKHDKYIQNQRLQVARLGGIATAAGVVGGLLVQFVLKFL
Ga0244775_100011942	F071250	N/A	MKKLVSLENRVEKLLKKYKTLRNNNKALCVKVWEQQFDERKDITSNFFAMYESGKYVSADNITRIARLVKEHNPELRGTNHATNKKKEQLIKPLLKR
Ga0244775_1000119429	F071242	N/A	MEATSKERVQNKVGAMVACLEFIKLNVKSESNFGRIANGKRKLKMWKHYAWKITRISVNVAFWIFILYKLLS
Ga0244775_1000119431	F028175	N/A	MAITIDDQPYQYTPIGQRLILVASSDNVSNAGFRYVFDFGSFQVNVQPNAANKGVLDLAPIFRESLQHNPSFLTTSADTENTSVAFISCTIKEGWLVDGVFTVSGSGMADIDDVYAFLAEYQVADGYKPDPNVRYGMDGITKYAMSERTTDTHKWIEAPSRGLSSDWVYIPTRVSDWGVIYAPSSSALLVDNDFDIAVFTSYDDTDTIIDTQFLTMADNSSIVNVIGSYYANIDSWGGLDLTGAKYYTIQLGKEITFPIYSPSSRLYCFYLVADDCRFDNVRLGWTNTCGGVDYFNFTKKSELSFNYDRKQYQKVVGTYNASTFGFNTYDRGTTDRYVTTTKGLQINSDWVSVGEFELLQTLCRSNDVFIINDDATMTPVLVDTQNFVIKDERYSKLYNVTLNLKYSQPVGL
Ga0244775_1000119432	F036240	AGGA	MANEQSAPNFFAVVNDMAKRFVELMQSDYRMKRKVGRNFTNAVASGTLEKSLKYRLQIKGQNINVSVYAKGKAGQYFLFRENGVNGTQKSQGAPYSFKKGSGSKPAKGQMSPMQKAIYDWMTIKGIRLRDKSSGKFKKSTEELKQQVAKLIMFKVRRDGIKGWKAFDYAYENIWDEYESKVVAAYAKDFTATIENEFKDI
Ga0244775_1000119437	F046371	N/A	MSDNKLNFLKSQISAFNPTWTKEQVEMEAIRIYNEANTIDDDDEGCLYCGS
Ga0244775_1000119446	F023350	N/A	VTLETYIEGHYKKFKELAKNISRGEDYYEDLLHDSLLSMFGSKHIENLIDTGDFEFYLIRVMYLAVNSPTSPFYKQTIAWNRNRRDFKEYAHEVDKTWLGARMTNEQLDILISRLSEFERLIFQEYIFEGFTYRELSKQTGIPMPFLYRTIDNIKQKIRANVIRKK
Ga0244775_100011948	F012871	N/A	MYGIALPEAQLLQMLHEFIGKHFRWVTFEHFNLAFELNAANELSKKCEHFGALSVSFIGDVLTHYKPHRDKANLQIQREIAQSIEEKAELIKENEMAVNDDSWRRMLKEDIDSFKQGKYTTLELRGVSMMRWLEESKRITAETFTDDEYNFCKAKARKTVFNEQQLSKGMVERMSDRKRQLLKESIQFEGLRELYKLYLSKQ