Scaffold Ga0244775_10001168

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10001168
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31250
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (53.85%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F002406	Metagenome	562	Y
F040107	Metagenome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000116810	F002398	AGGA	MTALIGIFLLTSLDPINNFVSLKTYISQNAQAHCQVYFINEDIPNYPRVNVIEKNEGDFFAYLDTIGIEHTKLGSYYFFNKKASND
Ga0244775_1000116813	F002406	GGA	MSDRLRDELSKEYDEETKDLIIRAFMQGLYQQPAIVEELKSSSLIESDYFEDAE
Ga0244775_1000116851	F040107	AGG	MTGIEALSLLKDGKTLRRESWEPHEKCKALDFFGQWVIHTVIEQEDKILDKELDSIFKNSFSLSEGNFDDFFGLFDTIDAGEFLHDDWVIVE