Scaffold Ga0244775_10001111

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10001111
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31998
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (34.04%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058510	Metagenome / Metatranscriptome	135	N
F058511	Metagenome / Metatranscriptome	135	N
F070056	Metagenome / Metatranscriptome	123	N
F076587	Metagenome / Metatranscriptome	118	N
F083373	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000111111	F083373	N/A	MSTHPFDTSSFASVKLKDVPSYLQNEAADYNLRVAAWFDNYAVNAAQFDAAMADQDKRWKMRTAEGWEADEGGWYTPTGISEHDWEHDYGNPFPEEPVWENYKALKRCTAGWRIDDTGWYSPEGQHESEWTGPLPEYTLL
Ga0244775_1000111118	F058511	N/A	MPRYALKTTHEGKVLYLAAYYANFPKNNGIRLTYKAEDACSYVTIEKACQVARSLEDSMGCIPSIVEVSY
Ga0244775_100011112	F058510	N/A	MLSQETELNFKVGRYADSLPVEVCVTFAAADSNKRPFIEGTITSPSAQIYDRLNNPATSMRCYCHSDMPLQQQEETIASIEPGTTIRVLAQQPSTKYDNKAFGTLISSFNTFKSENKKLQLLTTGPAQKQTFTVSNMPADLVERMDAKLDDMDVKRTYFLKKLMNKFLVGDFDDDFV
Ga0244775_1000111146	F070056	AGTAG	MEYAYMGKSLEKVTKPDGSEVWELVELREPQPEPEVCKAVRKRKPSKPAEETPTTTFDF
Ga0244775_100011116	F076587	GGAG	MAHAQLISYSYTKGSDLLRVQATVDDAVQVLPATHLDPPEFDSAHCQAVILWDEPLDHTNAPTQEQVERMLPWITDWCVIPPITFDDD