Scaffold Ga0244775_10001091

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10001091
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32371
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (7.84%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003127	Metagenome / Metatranscriptome	506	Y
F004474	Metagenome / Metatranscriptome	436	Y
F010918	Metagenome / Metatranscriptome	297	Y
F012672	Metagenome / Metatranscriptome	278	N
F038677	Metagenome	165	Y
F085715	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000109116	F038677	N/A	MAGEFDFLEGFGISSTDVAQPENVYEQFLLTVGNQVTKDLSDYIKANANNSGGLAASVVYFPTGALSFEIQADDYFKFQDQGVNSVGANNHGSEFSFRYPGVSPRMANAIQQAYGVTTSHAYAISHSIKEHGIRPKKIIETVLSEEVLDRIANDLAEVTGLIFSIKFDKATQR
Ga0244775_100010912	F004474	N/A	MNYLLSVENLKKLGLIHSNTDTKILAVAIKRSQDIQLQPALSTPLFKALLLRVQNNTWTQNYLDLMNDYVVPCLVAFVDYRCALLLNEKLTNKSVGRIQDENIQPNSDAETSALRDQLRKDAYFYKERLIVHLMADNGTKYPEYIETNSSPGHCSENMTKDRNGYTPINFII
Ga0244775_1000109120	F012672	AGGA	MNLVRLENYFNMAYSKEYIKNLELWSIEYIEECSSHKKETLSNKGEIIMVMDRHIPTIDYFLRIWIPIIRKEKGIVPSTWYEWLNCDDKLKSETIKKIDDLFKGLASDIVANEGKGIFYAKNRLGMHDRQQIETRTVDKFDFE
Ga0244775_1000109125	F085715	N/A	MFWEKDAYAIAKKLTNNHELHRDLVSFVFILLHKYELEANVLPKMFARFAWNQWNWKESAFNKEMRFPSNELGEIIQDESEDVPNKYQNLINSFLSTRPKDDQELFIKEVTKMHLYGMTYREIRDNTGICLDTIHKTIKKFKYDLYNYSGGDCESDAKLSTTEH
Ga0244775_1000109136	F010918	N/A	MKRFKITFNYFEGGKKRLGVRILEAYDRDHAIIKMDLYRPLILKVETL
Ga0244775_100010916	F003127	N/A	MSLCDMIAGYNDRTCTNGKGGIKSVLLFPLGAVTASTVLANEVTALTVSGETFLYKLKSNLSSYTAPIKVDKNNGTLWYEQSLSMILASDNKELRSEIHLLAQNEVVCLVENADGTIVALGFGEGLQIADANEYTSGVLKSDRRGHVVVLNGMENDAVPDVAPGVYATLLTQQSPVI