Scaffold Ga0244775_10000856

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10000856
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36930
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (84.21%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001991	Metagenome / Metatranscriptome	607	Y
F002997	Metagenome / Metatranscriptome	514	Y
F006660	Metagenome	367	Y
F022651	Metagenome / Metatranscriptome	213	Y
F051929	Metagenome / Metatranscriptome	143	Y
F092064	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000085626	F051929	AGG	MTEQRYLAGGQEFYYPHAGDPPAPENTKLLLLTTGGICTTGTWNNNWCIGWLPLPKRNMTKEDMK
Ga0244775_1000085634	F001991	N/A	VRGASPPEFRGTILAIFNQNTLTQVSGFSNPIIAGELVYNQKTYWNLSMTANGSPVSLVGATIDASILRRSVTNITDTRNGLTFDIADYEPAPTPVALTISNRVDASGTFTLVIDESTWSVLSNDPELDINAQNCVGFSGRIKIGFPAVGATPADDGIIFLLFLVRSDGVYN
Ga0244775_1000085639	F006660	GGAG	MSFQTIFDISQSIGVQNRRTIGQQVSRSGQVRVAQYLTSVPWQFTVKPHNYLYYPQVRGVIQTIDNYDRQIPQTITFAGTGLNWFTAYQGGLTLGQVSALTLASVPATNATTITVGNLPSVTSGVVIFAAGDFIQLGSYTYKVTAQVLRGVGVTVPVTLHRPVIGSVSVGTLTAVGSACTFYLLAAQCPTYTLNPMTNGAFVQWDGDFVFIEDIIG
Ga0244775_1000085643	F022651	N/A	MTQQTTIQNTGDLLSFLAKQSETRKDWFGFMQQRMTAVTLAHEIAKHHAHHMSPGEVVAYALALNQEIFNKIIKG
Ga0244775_1000085649	F002997	N/A	MAIARFENLTVNNLTFGQSTFGEQATTQTLWFITRGRVHAVANNVKITEKYRVYSDVVEFTLNYTPNIKTIIDNQNLYSITWRGFDWRIDNVREADDRMSALFLCVRNDPLTAV
Ga0244775_1000085656	F092064	GAG	MRAAPRQIIEFLRDPMKWEEKSFETAIRNEVENNTGNITASDELLIGSLVMVVGTMITAHVRILDTGLTYEFHSGEAPSAWYKIRTESLDKAIKILAELALVARGRPKKSNKVSDVDELFASA