Scaffold Ga0244775_10000810

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10000810
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38061
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (57.14%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F006182	Metagenome	379	Y
F015339	Metagenome	255	Y
F018175	Metagenome	236	Y
F019834	Metagenome	227	N
F040107	Metagenome	162	N
F049636	Metagenome	146	Y
F060914	Metagenome	132	N
F090404	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000081010	F040107	GGAGG	MTGIEALSLIKDGKTLRRESWEPHEKCKALDFFGQWIVHLVKEHDNEKLDKELESIFQNSFTFTKTTFDDFFGLFDTIDAGDFLHDDWEIVECQD
Ga0244775_100008104	F018175	GAG	LSEESKKYYHNKVREFEKRTGINMNVKNVSKFYDYNIEYTEYNYSAALDMLQKHGCFIYHDELVEEDPYSHGTHWRKYGFALHNEKIYIYYFEVKQWGKQVKEDTLEQYKNKTWKAAKADTNFFPKSIENKHIGSNFDDFAKENNIELKRDMNWAIKMIESGKMVSREGNPGLTLFPKKYDHAESTITTVDLFAEDWVVVPNKTFKVVLDDLNAGKTIRRKSWHSDWGVGKYARYGKIIYQDLIADDWEVIDVVAEVNQIQKDHLKDRNEY
Ga0244775_1000081045	F006182	GAGG	MKVEFNITGTMEVPDDAILHYDVAGKLYALEFNDIMYMLQACVVAEGGAWGNEIITDAQELENHSIKNIRYNDAEFLANIE
Ga0244775_1000081049	F019834	GAGG	MKELKFSITGTIFVPDNVEYEYDFENQIYSFKINDKTYSLIAGLEADDKEIIVTDDNFKSHDIKPFEYEDAYFED
Ga0244775_100008105	F015339	N/A	MSTDPKIHSEEYVKGRIYSFTRFKTYLHQIAHIFCEEFQYDKDDIIEVSMSDDGNTVWVHFDSGTIGFASELLWDKNVRETFRKNYEI
Ga0244775_1000081050	F060914	GAG	MSSNNYKKDVQQKDTQLKRLIKVRTDISASIYPIQLYQVDDYFTAEENGIELFRFKSQHLCSIKAKELIRRRKNEKNAKIIESIEELKALGIL
Ga0244775_1000081051	F002398	GGA	MTALISIFLLSSLNPIKNFVPLKTYISENAKVHCYVYFINEEIPDFPRVNTIEKSKKEFFDYLDSIDIEYSKVGSYYFFNRKRK
Ga0244775_100008107	F049636	AGG	MTGKEALDKLEEGFTLRRESWESHLKCKAYFSDDQIAPEYVPDDPEFDSFVGFYDALDSGEFFEDDWEILDEIC
Ga0244775_100008109	F090404	GGAGG	MKFSEVVDSLMAGKRVHKTNWESKTAFFLYDKEDNTFDFYEVLDGEVCRTQSYTELNLSPKDLMSDFWEVVE