Scaffold Ga0244775_10000780

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10000780
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38688
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (59.02%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000332	Metagenome / Metatranscriptome	1283	Y
F002997	Metagenome / Metatranscriptome	514	Y
F004432	Metagenome / Metatranscriptome	438	Y
F014737	Metagenome / Metatranscriptome	260	Y
F023109	Metagenome / Metatranscriptome	211	Y
F024113	Metagenome / Metatranscriptome	207	Y
F043944	Metagenome	155	Y
F054875	Metagenome	139	Y
F092064	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_100007801	F092064	N/A	MKKAPKQIIAFLRNPTTWNADAFETAIRNEVENSTGALTASDELLIGSLVLVVETLVQAHIGLLEKGAIYHYNAGDAPSPYYKIRTESMDKAIKILAELALVARGRPKIKNKASEVDELFATA
Ga0244775_1000078015	F054875	AGG	MTKFSSAFGDKYQTNRKNLLIRSFELGGHTFKVRIPLVAESDAIYKKVSEPDEETIEKVYQEITKPLRQFENNQTEEFKFTDDDILVDGRSMREAAKNKAITEARITEFFKLLVPEMEGVTLEDLTYADIEEEFPISVQMQIVEKIGEVISPTYREARGN
Ga0244775_1000078016	F043944	N/A	MIFNGHTLETIAELDDVTLVNIQTMYADGMVGNYGVLTQLATLTNGVFNYMRTANSPPYKLANILGSAYDYIYPPLSDDKKKAAVNDSLLAFMQQAQGFDKTLFGVKDG
Ga0244775_1000078019	F014737	GAG	MTTINAVTGSQINHAEFVKLTVGNAATVYTFCNAAAPITVGGITFANLGALLNVGDVQRDIKATSDDMTIALTGIDPTNVGIILGNDIKGSLVEVWRGFFDSNNQIITTPTTQFFKRYQGIINSVSITEDFNSEARTRIATCSISCSSMRRILENRLSGVKTNQNNWQFIYTGDTSMNRVAQISNTYFDFGSPPMTQTQASETTVTMDNNSGGGDAP
Ga0244775_1000078020	F023109	GGAGG	MIRQATRYDIPRLLEIVEAYAYENPIKKLGESCNHFPRYVEELLFSIIQGRGFIFVDSNLRGAIVAYKSSNIWSPKVKELNELLWWVEPEYRNGTVGGRLWKAFDERAQAMLKAGDVDFVCTSISANGPLIDYTRRGYKALGATFVRE
Ga0244775_1000078023	F024113	GGA	MAIFNKNTLAQVSGFDNPILAGELVWNQKTYWNLTFTNSATSLPIDLTGATLNAQIVRRELSNIIDTRNGLTFDIADYNPAPAAIPLTITNIVAAAGSCTLVIDASAWSLMSTDPELEINAADPVGYSGRVKVSFPVSGTTPADDSIIFLLFLVRSDGVIVL
Ga0244775_1000078032	F004432	AGG	MVTAKKTAKTPVKAPAKVAAVKRSTPKPKPVPKVVVKNQTNVDKIIGLIEWVDNPFKLFTVILLSFLFFAGYFAWDSRQVILQAITTQDKMPQLAKQEDLIAPAQSLLKDVDGLILLVHKANLASNSRTTVLALNADGTREKKIEGTVTSLFNASADRNSAMVAMLNGEVLCEEFNPSSKVGEWGVKQGVKFMCRGSIPPDMGKFAGYVAIGFKEKIEDIAALKTRINLAATDMAHE
Ga0244775_1000078033	F000332	GGA	MKWLILLFVLVIAGAVAKDGCHVREFYGIGYTIHNPSERHQQMIQWLKNNAPYCKASDYVVIWNNIAEWAGTADSSETRALIIHGYKDAVTREKK
Ga0244775_100007808	F002997	N/A	MAIARFEQITVNNLAFAKSSFGEQTTAQTTWFRTRARVQSVANSLKISEKYRLYQDVVNFILNYTPNTRTMVRNQNLYSINYNGYDWRIDNIRESDDRMTVVILAYRTDPVTAV