Scaffold Ga0244775_10000777

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10000777
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38758
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (82.76%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001396	Metagenome / Metatranscriptome	705	Y
F004761	Metagenome / Metatranscriptome	424	Y
F013753	Metagenome / Metatranscriptome	268	Y
F026484	Metagenome / Metatranscriptome	197	Y
F032258	Metagenome / Metatranscriptome	180	Y
F036236	Metagenome / Metatranscriptome	170	N
F048262	Metagenome	148	N
F048959	Metagenome / Metatranscriptome	147	N
F058086	Metagenome	135	N
F066605	Metagenome	126	N
F069861	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_100007771	F004761	N/A	TIVDQFAREGFQRIYALERRWPYLQETYTFNTVVNQREYTISTIGDIREIISVLDTSSSGARLTLIPYDNAEEIWLGNTDVPSRPYFYSFWDKKLQLWAKPDAVYPMTVRAFRNPVYTWLSNPDETIDLDEWFHALLPYFVLGRVYQRQEDAQLSQMYLNSFEQGVGLARRDLMKASSAQPVVMSGGRQYPTMRRWLQTLGATIGQ
Ga0244775_1000077713	F048262	GAGG	MMAGALEPIAESIQELQPLREAVADCIEKLSEQDQFIVNALNSEMISLQKLGERMGVSKPHAWRLRNAAYERLALHLRSHPYIQERFNLDENESGNSGI
Ga0244775_1000077714	F058086	N/A	VKESRWDFPAERRYNFSDDLKFGKKGEELTRDFLQSIADGSFEVKTDRYRNGRMVVETEQNPRGNGWKPSGLEVTEAKWWVYIYCLDGAMLAVSVERLKRYIATLPKSRMKTFAWNSANPAKGFLLLPEEVMDMMINPEYDSEE
Ga0244775_1000077721	F048959	N/A	VRKQEPTIEVSLTLSELRTVIKSLAIGVDQLAKKVMRHAMDERVESVHTELTELLSAKHEMETVMSLALQGDST
Ga0244775_1000077739	F013753	N/A	MKHNEELTLTQQQQVYVEWLCTAPSERLPATKKAMALELGVDITTLRRWEKKEVFRNVWKDTVDEVQGSPERTQRLLDTLYSKALDGDTKSAQLYLQATNRMAPPTVTVQTNKKAAELSDAELDSLIAAVAEREKAQRTHLKAL
Ga0244775_1000077740	F026484	GAG	MATTNDAMFTALSGSYPSAGQTLGDLLYAFWSEKGLQYRGTLERDWYISEGAVGTTLGDLANDYFSNLYDVVIFNYSEPDEWLELQVFDRFDTVEQQVFFI
Ga0244775_1000077746	F036236	AGGAG	MNKAKDIAGRIVALFLTNALGVVTGAAIIAPDLEVWKSALIAGAVSIFKVAEQLAKASIDGVLTKDEIDAAFGASPKKIAAKKVAAKKA
Ga0244775_1000077748	F066605	GAG	MSIVMKEFRCLECLNVFMDSELPRRGSICFKCHIKSVRLGFTYGQEDFHGPTVKERADEQVRVAKEAGITAEPVGSRWV
Ga0244775_1000077749	F001396	GAG	MVWVPIIVAIISGPLVVVLQKLRKENTNQHAEGQILLRMVGTKVDKIASKLDNHIGWHEGKKED
Ga0244775_1000077757	F032258	N/A	MKNAVPAHSYYGQPVFGIRLAPTAGAKIAAPSAPYVGRNRCIANEDSCEGPKARGTDYCIGHLRSQGRAK
Ga0244775_100007779	F069861	AGGAG	MTKKRVYTGNKDGAAKGLRPGMKVFINEVIKLSNGALWNNGDWGVRPMRGKESLSVHATGRAVDLSYRHMPPSKGIKNGRIEALRVLKIVEANAEALGVEAIFDYIVKPHGRAWMCDRNAWLNYKKETIHGGGSGDWLHFEISPEMADDPAKMKEAFANLVIPAESPKSPEEQL