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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300024346 Open in IMG/M |
| Scaffold ID | Ga0244775_10000767 Open in IMG/M |
| Source Dataset Name | Whole water sample coassembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 39014 |
| Total Scaffold Genes | 57 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 54 (94.74%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Columbia River Estuary | |||||||
| Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F023810 | Metagenome | 208 | N |
| F033008 | Metagenome / Metatranscriptome | 178 | Y |
| F043366 | Metagenome | 156 | Y |
| F045060 | Metagenome / Metatranscriptome | 153 | Y |
| F070039 | Metagenome / Metatranscriptome | 123 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0244775_1000076718 | F033008 | GGAG | MAIFRPPTDNFVRPTLAENFTKGSVLSKEQRLANRLAAHYVPGARGRNVYLLTNGNFTENQPSDMGTVAKVYYGGHDIEVDATEVASLTAAGYGAYISG |
| Ga0244775_1000076739 | F043366 | GGAG | MTLMSRTVVHIRWADTHLSEGGWLDMPSYEDDGECLVDTVGFLVPVGEPGSKADHVTVWQTICKEEGIHAIHIPVAMVRDMKAIDLTLTV |
| Ga0244775_1000076745 | F023810 | AGG | VSIETPIEFELEQYKDRVDAMQMANELLREERDRYKDAADSLHTELDACRATLKQAESVISRLRTHIAQGVEL |
| Ga0244775_1000076746 | F070039 | AGG | VTPALIELFVDRLCGMYPTTNIARNTVKNAWVKDEMLLDASEDDAKTVLKMAESLGHYPNQYEVKSLFQKVMGVRQAEVGCDECDSTGFIYTDPDFENDSIKTRYVKSCKCRSF |
| Ga0244775_1000076750 | F045060 | AGGAGG | VNYDDWAAIGHANGWLGVRRNDGATSTGGAKAMTVRAGSQRAKLLATYFREQYLTDEEAGRASGLALLPKCCYWKRCSELRQAGYIKPNGKTRISSAGVEQQVCHITAEGIQVLAGIS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |