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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300024346 Open in IMG/M |
| Scaffold ID | Ga0244775_10000736 Open in IMG/M |
| Source Dataset Name | Whole water sample coassembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 39773 |
| Total Scaffold Genes | 59 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (22.03%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Columbia River Estuary | |||||||
| Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F031764 | Metagenome / Metatranscriptome | 181 | Y |
| F034567 | Metagenome / Metatranscriptome | 174 | Y |
| F054858 | Metagenome | 139 | N |
| F058818 | Metagenome / Metatranscriptome | 134 | N |
| F066775 | Metagenome / Metatranscriptome | 126 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0244775_1000073651 | F066775 | N/A | MTKNESLEIIKAALIEKRDAIQLACSALEKEAKEEKKAIFEWLFADELVSYAGVAIEVGYSGLYFKIGNKEIGSINERSYWRAEDKDKKYYFNTYATTCEDEFEFRRLIFNGRVAERMLNDMDSLKEAFDTPFSKKEELEALSLEFHILSGEIKQKDYQMQEARKQDIIDKLNGEGVEWTSGKSFEFNRQWSSYLVKKLKINKATKSGKTVDLEVTYALYDWSYDDEGNSKRVEKEDRIATHEGIKMEYVMGNFRDLIYI |
| Ga0244775_1000073652 | F058818 | N/A | MMEELLEKQTILSDIAGELYGELWIMNEKFWGSPTERELQEVTMSLLNLGHSVENTPEGDEAAKIVAKKFGFKLPPED |
| Ga0244775_1000073653 | F034567 | AGG | MEYIFNYYDYINHYGNRMYAIAGVKVMPVSYSSILFTGSYDECMERLDPKGLEGSIEDIYHRVAFPK |
| Ga0244775_1000073655 | F031764 | N/A | MNKQIQETINKVSTSFPSLFSREDVIKLLADLNAEMQDEAPKQVIDKDVLLTTFRQMLSEKDWDNVVDKDDIELSMGYDNKVEVDSVTINEDYLIDEAVDALEALWDALEEAASED |
| Ga0244775_1000073658 | F054858 | AGGA | MNKKEQRMAITRAFRAKLVETQGNGFSFDEDDVMLIFDFIKDGVAYIGLEYHRGLGEVFNPVRRWAEGHGDNTKHFAYEAISDMLNDELEEIRAKVEEQAMFEKINKGLGIAK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |