Scaffold Ga0244775

Basic Information
Taxon OID	3300024346 Open in IMG/M
Scaffold ID	Ga0244775_10000558 Open in IMG/M
Source Dataset Name	Whole water sample coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024346 Open in IMG/M

Scaffold ID

Ga0244775_10000558 Open in IMG/M

Source Dataset Name

Whole water sample coassembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	45804
Total Scaffold Genes	93 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (26.88%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

45804

Total Scaffold Genes

93 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

25 (26.88%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	USA: Columbia River Estuary
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Columbia River Estuary

Coordinates

Lat. (^o)

46.234

Long. (^o)

-123.9135

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002035	Metagenome / Metatranscriptome	601	Y
F007054	Metagenome / Metatranscriptome	359	Y
F043435	Metagenome / Metatranscriptome	156	Y
F051860	Metagenome / Metatranscriptome	143	Y
F058463	Metagenome	135	Y
F058912	Metagenome / Metatranscriptome	134	Y
F093410	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000055811	F093410	N/A	MKEYAVQKQLIPVDQNAGDPNWAKRQIWVYKLNGEDSLDEFDTLSEAQSKRDELDAEDPTPRVYRVVKRLDKFNYEVI
Ga0244775_1000055827	F058463	N/A	MMNVQAPLPIGEWKIGDENYFISFALTKKPNPLRRFFAWLFFGLRWIDFPQPKKVEEIKPSMGIKAGVTKVIQKGRHRR
Ga0244775_100005583	F043435	GAG	MKNLKTYQALTKKATARYGERTRMPNLNKVSKLLTELGIENSCYESSCEKWSSAAGYRYYTSGGSRTYTGFWFKVPQINMNIDSTDTYYSWNTKHYAEELVNLIDNHQK
Ga0244775_1000055834	F002035	N/A	MGEQVANNRETQEVMYLHEKDGVWYILSEPKSPGLVKKEYIPMGNRLVYPKKWGRKKAAEVFIQHLINDSEEVKRNAEEKLNILVKLKEEIKDWK
Ga0244775_1000055838	F007054	GAG	MNRVEKFQKAIEGVKFTPPQKKIVNLILKGYTIEVVNKHRMSGGELMWKNPNSDYLEHAGKVYKAFFNVFYQIKKQSGVELPTNEYIN
Ga0244775_1000055870	F058912	N/A	MYIGDNTMGLKETIAKQILELKLNNATKHLQSTIQKLQQKYDELVNENKKK
Ga0244775_100005589	F051860	GAGG	MRVTYCEVWGQVYLLPYVKLTHTRTLNGDLELIIGWLKWEIVIGI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0244775_10000558

Overview

Ecosystem & Geography

Associated Families

Sequences