NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10000554

Scaffold Ga0244775_10000554


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10000554 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45887
Total Scaffold Genes61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (22.95%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013763Metagenome / Metatranscriptome268Y
F014141Metagenome / Metatranscriptome265Y
F018176Metagenome / Metatranscriptome236Y
F018715Metagenome / Metatranscriptome233Y
F054037Metagenome / Metatranscriptome140N

Sequences

Protein IDFamilyRBSSequence
Ga0244775_1000055414F054037AGGAMAAPITYKRLVLSGDNAKATADEVKAKMAKDWKRDFPDGKLDIKTGLEGKMVIDVTTKDTSAASLASKIKDVASRNKVDVVTKDKPTLKAVKENDTKKPAMSDEELMKKIKSSLTFQVSGGKKGKPGLQEGPMDKRVAIVFLKYRGKSFPMDYKPDSMFARFVNDLEKTGAFMDEDAVSDFMSSNDFYTYANKFGVEIEEPTDNDMLSIAPKKQIEPQDMIPGRAQGDVNLDAPHRSTDIYELMKKGKLKKSELKEIIKKFSK
Ga0244775_1000055437F014141N/AMKNREIIMRRLERTEGEIEKIHFFLNRGGSREQVEEVLITMREAISDAKAFIQQEPQSQGDINPY
Ga0244775_1000055439F013763N/AMSEFQLKEKQGYIYVGEYFHKFGGNVPTEKKLGKIDDLLKIPQIDDYAFSLDFTAADIYLVEDVDMIYTALTVLLSHDNIKEDWFTDGDGDLKERVANFMKALGYGEIADVDGDGIPDHLDDHIG
Ga0244775_1000055443F018176N/AMLNFLLPILLTINPTDTTKVNVQVTNVQHIQKIGDRDVTFGVKETVEELLIEKGYTPVDSGIAFITQVSIDSIYSPQELLNIMGIQWLRKDYIVETTICIGESCYKGKGERRTFIFAMFLNVENGEVPLNRKAFSKALQEALNKTTKQL
Ga0244775_1000055460F018715N/AMSYEEKFRMNQRDIDEANINDQCDSILAEADKHNLQLEVVWSAFKHKEQFPTASLLECLQVGADEWDV
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