Scaffold Ga0244775_10000434

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10000434
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 52080
• Total Scaffold Genes: 83
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 62 (74.70%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000354	Metagenome / Metatranscriptome	1244	Y
F019477	Metagenome / Metatranscriptome	229	Y
F044488	Metagenome / Metatranscriptome	154	Y
F099157	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000043425	F044488	GAG	MRYGVSFSRDYKDGTVVIRDFLSEPKGRVLCIIVRDNRYEAEQIAQHICDLLNDNNQTQS
Ga0244775_1000043431	F000354	GGAG	MAKVNYDAFNSFDINDACDYFDCEDQRAWKKIGKFIVADGQEYVDVMENHFDFEDTAEGEYAAFDAGVRYALTKMNAAFEAAGLDLEVKTADLVEAMGFMLVRTDDDPESFVKRALKKPVLHVESWV
Ga0244775_100004347	F099157	GGAGG	MRYYDELFRIEDREGFTVIVDKTWEDIALRDCFDDSCYDIRDMEIKVNRGDLDWFMLRVRASIDGHELGSAHLGGCLYEDAREVLSDGTAEDLIEQAIMEAKDQVYPLLRRLLAINERLENPEIAYYGA
Ga0244775_100004348	F019477	AGGAG	MTGLDFKELRVGRMFHCNGNDYVKQSSRTARMLANGRVFYFRQQDYIHPCAW