Scaffold Ga0244775

Basic Information
Taxon OID	3300024346 Open in IMG/M
Scaffold ID	Ga0244775_10000376 Open in IMG/M
Source Dataset Name	Whole water sample coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024346 Open in IMG/M

Scaffold ID

Ga0244775_10000376 Open in IMG/M

Source Dataset Name

Whole water sample coassembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	56159
Total Scaffold Genes	123 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	35 (28.46%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

56159

Total Scaffold Genes

123 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

35 (28.46%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	USA: Columbia River Estuary
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Columbia River Estuary

Coordinates

Lat. (^o)

46.234

Long. (^o)

-123.9135

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005287	Metagenome / Metatranscriptome	406	Y
F007770	Metagenome	345	Y
F023615	Metagenome / Metatranscriptome	209	Y
F029108	Metagenome / Metatranscriptome	189	Y
F042280	Metagenome / Metatranscriptome	158	Y
F092065	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_10000376105	F007770	GGA	MSGEGLSVSFKRTKDTTKSNRQLLAEFRKLVYSSNKVMSHLKWYGEDYSVEIREHGDEELQKWQQEDVAIKDSFQFCISVYDSWYDDANYFECHKTEYSFVWIARKFAQENNLMYFPEGFPAEWIEQEIIDGEKNWNHFKVKPDDKNIDKICELWYDYGISSLEQERINWNQAKESIKKLMNKEKCVIAQQ
Ga0244775_10000376108	F092065	N/A	MQEIINKIYERMEFCANAHTICQAEEQAFISELSCLNEVLDQIEGFPWDHLENDC
Ga0244775_10000376119	F029108	N/A	MNQINSNKYLVGKKKSGKGMVGHKGGLATPTGAFGGKSKFNKKKLDNKS
Ga0244775_1000037645	F005287	AGAAGG	MNINSDQIIYSEHNYDECFEFVDGKGRVPDGDAIGFVSEDGKSLTLFSDIVFSKYDHKYWNNLELENDIDRVII
Ga0244775_1000037678	F023615	N/A	MNRFELEDAMSDLHQIGEDIETIIYAIGDCPINHTEDQLLNMLIGVKQLHDTRYQKMWNVFEQLIEKGIISNKEK
Ga0244775_1000037699	F042280	N/A	MGFMKIKNKWDEEFEVNVGDWIGFKSDIEQDGKVKQIQRSRRAMLVENKNGFDGDYIGGDTEALVGFDEIWKG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0244775_10000376

Overview

Ecosystem & Geography

Associated Families

Sequences