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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300024346 Open in IMG/M |
| Scaffold ID | Ga0244775_10000281 Open in IMG/M |
| Source Dataset Name | Whole water sample coassembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 65152 |
| Total Scaffold Genes | 84 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 63 (75.00%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Columbia River Estuary | |||||||
| Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005589 | Metagenome | 395 | Y |
| F012775 | Metagenome | 277 | Y |
| F027851 | Metagenome / Metatranscriptome | 193 | Y |
| F040107 | Metagenome | 162 | N |
| F060919 | Metagenome / Metatranscriptome | 132 | N |
| F090404 | Metagenome | 108 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0244775_1000028132 | F040107 | GGAG | MTGIEALSLLKDGKTLRRESWEPHEKCKALDFFGQWIVHLIKEHDDEKLDKELESIFQNSFTFTKTTFDDFFGLFDTIDAGDFLHDDWEIVE |
| Ga0244775_1000028133 | F090404 | GGA | MKFADVIASLMAGKRVRKTNWESTTAFFLFDNEDNTFVFYEVLDGKECRIQIYTELMLSPKDLISDFWEIIE |
| Ga0244775_1000028137 | F060919 | GGA | MTGREALDKLQAGFTLRREAWEPDEKCKAYFSDDLWSIRVECDSISPAPEHVPDDPKFAEYMSIFDAIDAGEFLMDDWEIVE |
| Ga0244775_1000028145 | F005589 | AGG | MAKFKHSFWRYVPSTEKYKSEFKFVESFETDSDAVPEFHDHYCIDHVVDLETEQMRVKNHSAPEYCVSKYVGWGLELPPVEKTTDKEIYVVIHRSSFSHKKIEFDEFIEPANHRYSQEDWEFLLSILEQRFTKQKEWAKEGIRVPSQYEDGTQVFKTENEFRAFSFGRRAYFLYHLVYNYNFRLLIRKLNIAYTS |
| Ga0244775_1000028154 | F012775 | AGG | MKLFSQMTRPLIDLGLKIRYRRWSEAYYIYRDEEKLMDSLGNVFYHSWEDFIRLHAHILDNAGPDWEIYEEVEFDNL |
| Ga0244775_1000028156 | F027851 | GAGG | MFQAKSILSKLFNKTVGIPEVNINKLPFANKIVGDWEEKSMKDLIKQLPKETIQRLIKVCQEELKTK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |