Scaffold Ga0244775

Basic Information
Taxon OID	3300024346 Open in IMG/M
Scaffold ID	Ga0244775_10000141 Open in IMG/M
Source Dataset Name	Whole water sample coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024346 Open in IMG/M

Scaffold ID

Ga0244775_10000141 Open in IMG/M

Source Dataset Name

Whole water sample coassembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	92232
Total Scaffold Genes	158 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	41 (25.95%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

92232

Total Scaffold Genes

158 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

41 (25.95%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	USA: Columbia River Estuary
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Columbia River Estuary

Coordinates

Lat. (^o)

46.234

Long. (^o)

-123.9135

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F051137	Metagenome	144	Y
F064721	Metagenome / Metatranscriptome	128	N
F071252	Metagenome / Metatranscriptome	122	Y
F073564	Metagenome	120	Y
F087204	Metagenome	110	Y
F097358	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_10000141147	F051137	N/A	MSKNKVTTSSYFIKRLRDCGYVVDKLFTEYAEADPRSWTAIVDPMVSSILVTCYNNHNDLGEEYFEMHDGGQYIPERFKIKTSSIEVIVEYLVKFGINNKASTYAGA
Ga0244775_10000141152	F087204	N/A	MIITSSQQIQDIINPSNALDLSEFEDITLKFGSFVCIARKKKFNFLNFLKFLIEDEKTQNIYFKLLNEDNLQLIIKAYLNSTPNIYKKIFRSKKTKFTTKTQTQTDT
Ga0244775_1000014135	F097358	AGGA	MKTLFLFLFILLSLNSCTVYTEKQSEALSKVVYASKDSMEAARIDLADKYVTETTRLVRPPKNRIKIESIYQKSIQQHIETIASSSNREPIPINKQRMVIIPEKYRADTVVVVSTEEYQRLLKDKETFAQIQRDNEGLAEAKQTVDNELIRQLENRDKMINDLNIMQKKLVEKDLAILQRNIIIVFLISAIGGATYLRIKGIL
Ga0244775_1000014137	F073564	N/A	MIPFIKNAIMTGVSYLSSNKVPPNTSPEKQKRLRSTNHMESKKFYIVLTSVIILAFFYFASVGMIFLIPASPEFISGFVTMFSKTIEILSIIIASYVGAQAVVDLKYGSHSSASLEGTTHTEKTENITVIHTNAKEDDYELI
Ga0244775_1000014172	F064721	N/A	MTLKQKIVSHVIVGGLFRVSEFIANIIMWLMRLFKTRKFHDLYIYLKYEQDFLYPLAEKICYCLGLRKEWDVHKEGLVRLARLIFGENEK
Ga0244775_1000014184	F071252	N/A	MSNKYDKFTKKALDKMFTYVGFEGFNEEFTKQHEDWYQQKTWTMEQSADFKKWFITETKKDLKFNKNMAEREFSWFDLKWGWKVSDDPYFSKQKELVHD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0244775_10000141

Overview

Ecosystem & Geography

Associated Families

Sequences