Scaffold Ga0244775_10000125

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10000125
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 97139
• Total Scaffold Genes: 155
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 126 (81.29%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Associated Families: 15

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000311	Metagenome / Metatranscriptome	1326	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000671	Metagenome / Metatranscriptome	945	Y
F000852	Metagenome / Metatranscriptome	860	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001125	Metagenome / Metatranscriptome	769	Y
F001562	Metagenome / Metatranscriptome	670	Y
F004051	Metagenome / Metatranscriptome	455	Y
F005741	Metagenome / Metatranscriptome	391	Y
F007263	Metagenome / Metatranscriptome	354	Y
F023344	Metagenome / Metatranscriptome	210	Y
F053291	Metagenome / Metatranscriptome	141	N
F063705	Metagenome / Metatranscriptome	129	Y
F099281	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_100001251	F099281	N/A	NKNFKVKNGLNVAGPATFDAAVNVDNLVLNSTPLAFDSSTGRLKIQINGAWKEIALLTDAAEDLGALTFMDIGLAMDYNGQPIYTVYANGVNTTATKFADGGDYSTEVYSMSFDSGTIA
Ga0244775_10000125126	F000852	AGGA	MTTKREYLKAQGITVGVRGRFSGAAKVALQEAATKGIVFTAEPVNKAK
Ga0244775_10000125127	F000441	GAG	VNDQLDKAQKLLWGGSETENIEAHNIIAKLIKDRIEQTNLT
Ga0244775_10000125129	F000263	AGG	MNAEDIGLPPHLQRMVNAGVSGLDIMHGELKNLMFIAEQELSDAQAIEDESEEAMDSMARTEATGRLDALVELYQLTYQLSFAIGEAYDRELKAGMK
Ga0244775_10000125130	F063705	GGAGG	LTKSSQFLEYMKIHLISLNQDLEDARNNEPLNEDEYWESDSFYMGAIDATEHLLSVATDIMNSTSERYE
Ga0244775_10000125132	F053291	GGAG	MITTQELINYIYDDNLIHFDDRDTSDDCDCHIHITLNTMVKYMEAIEC
Ga0244775_10000125133	F023344	AGGCGG	MEAFTDTVGEHILGAIQVDIEQHLFEQWNSKNLDEGSDYAEWQFMSFAPDNLKQSYNEYYGYIEGDEYCL
Ga0244775_10000125135	F001125	GGCGG	MGNRANFGFRDSKGETLYLYGHWAGSEMLHHLATAVAKAEPRWTDEAYATRICISQLVAQEWESETGWGLYINHIGDNEHKVPVIDWSKKTFTLYEEDLSQVVFSLPIDKFVDKYSRLVM
Ga0244775_10000125137	F001043	AGGAG	MSDYKDGFQDGYKFAREELMEKLSEIDIADIDSWILDRLSEMIEGGNL
Ga0244775_10000125138	F000311	GAG	MYFELTAPTQVAFARATWEAELLGLDPEQCGPLTFNIGTGSIEKVSRIRDKYNLTESYWSDREATGYKEK
Ga0244775_10000125142	F005741	AGG	MKNRFRVEIYDANKLNDLTIYSDSGVDKEYLTELVISNIKQFSGRVNAYAYDAQKKKKITAMFFDEDTVHKLKSKIQSAARISFKLE
Ga0244775_10000125144	F004051	GAGG	MTIDNHLYQVGDLFTTLKSKKTGVIKEIHPQASGSVRVLLEMPTKETRWTSVSAKALLGA
Ga0244775_10000125152	F007263	AGG	MIKNYLDENEFYFIKDEMKFHCDESQFIYVCKAHGEQMGCYFCEFDYSKECECEA
Ga0244775_10000125155	F001562	N/A	SQFEIDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPIAFSIGLIEHEDYLAEMENE
Ga0244775_1000012583	F000671	GAGG	MSEKILCYCCNKTKNSLSAKKSTLLNINLLLCETCIDSKLEPRWVVILAGRQIGHEFVKEHVSKKRYPGDEILASELLI