Scaffold Ga0244775_10000046

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10000046
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 156126
• Total Scaffold Genes: 206
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 61 (29.61%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001222	Metagenome / Metatranscriptome	743	Y
F004489	Metagenome / Metatranscriptome	436	Y
F011622	Metagenome / Metatranscriptome	289	Y
F041866	Metagenome / Metatranscriptome	159	Y
F051863	Metagenome / Metatranscriptome	143	N
F062786	Metagenome / Metatranscriptome	130	Y
F097386	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_10000046123	F062786	N/A	MNEKEFVQWLKGFIEGVHHYNITPAQFDHLKEKLQSVGNTSIANYSTGNWVTNNTWE
Ga0244775_10000046190	F011622	AGG	MKLTDIILEIEYRTYEAMVQITFSDDGPTGYDDAIRALPGVTTCTIASENSDANKATYKIKIISQKEPAEAFAALKANATSKYSGIVAIEVGENTIEEK
Ga0244775_1000004624	F004489	N/A	MADAIQCMIAIDDVKSSVQGNDPRTWMKACAIETLLKGKSGKHFKNCLIGKMESTKAHIEDPAGYAEELYKEIKSKCS
Ga0244775_1000004628	F051863	N/A	MTKIEIINEIIVKKQELLEKLNVTKKKLEDSRVDAMFNVMQKYFGGEFTLDDVYISKPTYGYSGGSYEIKRPNKDYNYDKELMTIRFHEDWKTSEFDSIETSLYSTSDNSQWELERIFTNGEVAKVLLDHGDDLLAEMNTVRLTNKEEIDDARTEVYKVESSITNLKNEINTIEIDEATELLEGKGLVFEEGKKGSMDIKWDWTIRGIDSARIVSKTASGKSCNIELKVYDREPVVYEKVRMSNVDSLIWQYRDNVVNA
Ga0244775_1000004649	F001222	N/A	MKKLETYIKSVLSEAAKINFAGHTFVLKIDTNEDPQKKGVKVQFLPTKFGSITTTEQNDIAIELEKRLEQGLAEYELRVERDRNLKDKTIIGFFIYIEYFDKIIRKALSGQNPRSEEEPGTEI
Ga0244775_1000004653	F041866	N/A	MIVYQVHHMWYESNMIDECWHSVLNALRAAPDVEVKVKICFNFQTYIEQPEIDNFEYMLKKHTTHPLFRDFNPEVTIKTNDDPFYNIADWRREIYDTDAKYTVWGETDTILPRDIFAILNSVNIDQPHALTFAGRPMWDNSWDVVTHEKLRGYSKPCKCNPHKDDCIELLESPWKYKDYITQKELDKFNDESGDIKIEQVPHKLDGSTVCLSGGIETPFIAPGMHFVREDTCLEYFLRAKGIPQVCITTRLKGHNYKHPNKRVGTNATRNDEVFKKYAQESVNAMNKFLRDL
Ga0244775_100000468	F097386	N/A	MTYSEKRSASKKVLKAISSMKDEERMKVTYGIGYQGKANVYTIHAYASKEGEMSYSIWSSFSGMNVESIGPTTVKTYTFDMMSQKTTYTFPLYKMEIVNE