Scaffold Ga0244775_10000043

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10000043
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 159664
• Total Scaffold Genes: 232
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 157 (67.67%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Associated Families: 13

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014734	Metagenome / Metatranscriptome	260	Y
F015732	Metagenome / Metatranscriptome	252	N
F018930	Metagenome	232	Y
F020690	Metagenome / Metatranscriptome	222	N
F030761	Metagenome / Metatranscriptome	184	Y
F038997	Metagenome / Metatranscriptome	164	N
F048314	Metagenome / Metatranscriptome	148	Y
F051133	Metagenome / Metatranscriptome	144	Y
F052598	Metagenome	142	N
F058151	Metagenome / Metatranscriptome	135	Y
F059007	Metagenome	134	N
F072350	Metagenome / Metatranscriptome	121	N
F097359	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000004313	F072350	N/A	LRVFCFSVIIDTSKGDNEMQDYYNAKFTYDFDDKRNRYDVTEWSAPINGVRIGKVVFFSDVMEECIAMAEEFNYNYKAGQEWELFNNQECEFV
Ga0244775_10000043151	F030761	GAG	MEKFNQLKDTVFSYFEGFTKATADTFAWISIVVLIASTIPGFIAVMAGATDKMPPLDITLLVWASLLLYFVRSAILKDMLMVVTIGFGFAVQAILLGLIYFT
Ga0244775_10000043213	F097359	N/A	MAISKYILKKSRRQAAVKIVSTDANTINITYADVKYADQTIPNATAGNLFWPITDILYDVPAPASIVRGGNLVFSMSAGQESLSFTRDLGVALDEQAHANVTINTGAGNSSIIVVFTKGEGFNDPNRQILEDRDR
Ga0244775_10000043223	F059007	AGTAG	MPTKVYYYIKDKEGYASEDKTYHSIPEDEDGLFLWQHINKARKQAGVPRERFFIINTSCSPRKKSTWINPDWPPAPFPKLKKTRLAFGRYVIEKPPEPVDPDFD
Ga0244775_10000043227	F018930	N/A	MTWYANSEGRYGASGAKGDLGEAIVQDYCKTNNILFEDKNDINSQVNLKIDCIIDGIPVDVKSNYSRGTLCIELYTKRRGAGWFYTTSAEQIYGVDVDTKAIYRYNIEEMLAYIIANKTRAKRTEKGDVLMWVPVTTDIIEKLQ
Ga0244775_1000004327	F058151	GGA	MWRKREIMELQDKTTISTLVDIVPTDVSGKWVKKEDLYPFAAAVAAYVLTRVEKNINDSN
Ga0244775_1000004328	F052598	GAG	MIPTFKLTVTDEFHSDFVYETDDKEEVLDRVALWLSQLDNTPIYNLNIEVN
Ga0244775_1000004334	F051133	AGG	MNISRINQRNIEIDRAEKANVQYKRNEDYRKVVEKKNVERSIADRIARNMRLDRDRGRNVDVEV
Ga0244775_1000004342	F015732	N/A	MKMTKITNLETAVGIVRNNPTKFVALAEIMNILGVSRSNAFVYHTKASKILFSANNLDEIMGKVSPQYKKVTASVQGTSATKKAVKVAEIDAVIANLRKSGATVASPFAALGAR
Ga0244775_1000004344	F048314	GAGG	MFIEQIADMLRLGYTEHEIVRILAIPPHLAESIIQQAEQWNDEEFVPWTDDIVDDMATKYEE
Ga0244775_1000004354	F020690	GAGG	MISEIKSSDKMVSKGVFMSLSAIYTHSKTSKVIAQMITRSLPEFRKQLDLPRDVQFRVAPIKAKNTNGYYSVEGKLAVIDCRLGWAKALEVIAHELVHAEQYHTGKLKKKYNQRKGWLHHWNGTPGKKGTTYKAYRDQPWEQEAWNRQMYLAETVCRILEEKYP
Ga0244775_1000004391	F014734	AGGAG	MATESNEKSAFVEKLLFALLPLIIAGVGYLLSAVGTLAHEVTILQGKMSLVVTSDNRQASNTSAELARERLRQDLTEAVQKNRDSIQLNREMIAIHEEKIKQLQRAQGK
Ga0244775_1000004399	F038997	AGGAG	MLRNDLFKPWFVGDDWGFEIIDGEYKGVCIQIEKLEFDEKTEGGLLLDSHTVHKPDSITDEELKEPKFQAVVEVIINDILREAIDDLKQTRDNDTKESST