Scaffold Ga0244775_10000016

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10000016
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 232395
• Total Scaffold Genes: 353
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 168 (47.59%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012341	Metagenome / Metatranscriptome	281	Y
F085383	Metagenome / Metatranscriptome	111	N
F086835	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_10000016305	F086835	N/A	MPETDISKILIEGDTVTIMGVRYQRIIEPQSFYDKLYGLLDDNLIEWVDTDGITIRVLDLIRENIPEYKKGVGLPEYNAGWNDAIKTLKDKLR
Ga0244775_10000016330	F012341	N/A	MNITMKQFFDMVAKTIAEPHTIITEHDKRRAIRVFLYLDEFMMENVPEYCGDTELGEIDFGSYAAGVLDEIEGK
Ga0244775_10000016331	F085383	AGG	MTETEKLYKICILDLLIAIDDDVVDWRDYPKLWTAIQKADIALDIWAGMNLKQIKQELEG