Scaffold Ga0244775

Basic Information
Taxon OID	3300024346 Open in IMG/M
Scaffold ID	Ga0244775_10000010 Open in IMG/M
Source Dataset Name	Whole water sample coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024346 Open in IMG/M

Scaffold ID

Ga0244775_10000010 Open in IMG/M

Source Dataset Name

Whole water sample coassembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	262072
Total Scaffold Genes	261 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	171 (65.52%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

262072

Total Scaffold Genes

261 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

171 (65.52%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	USA: Columbia River Estuary
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Columbia River Estuary

Coordinates

Lat. (^o)

46.234

Long. (^o)

-123.9135

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002406	Metagenome	562	Y
F005589	Metagenome	395	Y
F021538	Metagenome	218	Y
F040107	Metagenome	162	N
F090404	Metagenome	108	Y
F101175	Metagenome	102	Y
F103262	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_10000010174	F103262	GAGG	MRYDKNQFLWNFLYVCMTKNITFSDQDFYNFSKACNIKVDMNYAMENFFDNGVSKTVVGSTSTFVASKSLLGPCYIHPQGTNPKNIKYNISKIIHELKLSQQKLTTDEKLKKITDYIDLL
Ga0244775_10000010191	F040107	GGAGG	MTGIEALSLLKDGKTLRRTSWEAHEKCKALDFFGKWIIHLEKVQDDKILDKEIEKIFQNSFAFTKTTFDDFFGLFDKIEAGEFLHDDWQIVE
Ga0244775_10000010192	F090404	AGG	MTGLGGSRMKFADVIDSLMSGKRVRKTNWESTTAFLIYDKEDNTFDFYEVLDGEVCRTQFYSTLDLTPKDLMSDFWEVVE
Ga0244775_10000010195	F101175	N/A	MLLIVLSLLQKIKMNGTDALTLLRAGYILRRKAWEPDIKCKAYFSDDMKSVKINIDDPILFALDTHLVPQWVPEKPEFSSYVSYYDVIDNGDLLEDDWEVVDEIL
Ga0244775_10000010200	F021538	AGGA	VDKTTIINCDCLCHSLHIRPDTESKTVDISLWNYGFNDGKLNWKKRLKILFDGFAYSDLVVLDKEELDLLIEALQEAKKNM
Ga0244775_10000010201	F005589	GGAG	MSKFRHSFWRYVPSTEKFKSEFKFVESIETDSDAVPEFHDHYCIDQVVDLVTGQMRVKNHSAPEYCVSKYVGFNLSLPPVEKANKQEIYVVIHRSSFSHKKIEFDEFLEPKEKRYTQEEWEFLLSVIEKRFNKQKDWAKEGIRVPSQYEDGTQVFKTQEEFRAFSLGRRAYFLYHLVLNYRFTHLIRRLNIGYTSG
Ga0244775_10000010223	F002406	GGA	MSERLRDELSKEYDDETKDLIIRAFRNGLFQNPGIVEELKSSSLIESDYFEDADED

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0244775_10000010

Overview

Ecosystem & Geography

Associated Families

Sequences