Scaffold Ga0244775_10000007

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10000007
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 303820
• Total Scaffold Genes: 426
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (11.03%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013300	Metagenome / Metatranscriptome	272	Y
F059976	Metagenome	133	Y
F074885	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_10000007341	F013300	N/A	LYCLIKTIEIMEKVNINTLGSEFSIFGNKGNVWSNTAHAYKSGVGNLCGTPALSSNHASYSGIEEVGCPECLKVLENEAKV
Ga0244775_10000007374	F074885	N/A	MENLVLQAIGNTEVEKINRIKKNKEFLRRLINDLGQVYTLYVSNRDDENSTTYRIKKQSNYIDTIFFTADENGCRFRTKMLGYRKGARPEWNLGWITDKYDTCKGDKAFMSIENPNHCHGHIEVVINFTEVSANLMDIIRDITRILDHEHVSKKF
Ga0244775_10000007376	F059976	N/A	VWVISYPYLCGITLKQYIMSKLIDRVIEVIQNDINGGDFTVIDELLSFVPRKYLIGYLPEEEWVQYENEYCCDNCGGGFIKGEMVFDINDQDLCKDCSK