Scaffold Ga0255062_10215139

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0255062_10215139

Scaffold Ga0255062_10215139

Overview

Basic Information
Taxon OID	3300024345 Open in IMG/M
Scaffold ID	Ga0255062_10215139 Open in IMG/M
Source Dataset Name	Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1770 RNA GHGhigh gp2 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	915
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location Name	New Zealand: Palmerston North, Manawatu-Wanganui
Coordinates	Lat. (^o)	-40.3794	Long. (^o)	175.6106	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002486	Metagenome / Metatranscriptome	555	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255062_102151391	F002486	N/A	MSIIEHGDSMDVTIDGKLRTVPKCTCGKCIVRRLRGNNFPSFPYNKNMCSTYIDDYDWKTNVPEDPNSVYNRSKHNSFEGAYREHIPTSLISTAKMSFKPFKVKEEEKQKPKEKDLEVPFIGKSTYNRHYPSWGKLTPNDNTLQPREEINVPLRGVPNYKESYPRYDDKYYNNGEPLNFAKSTLKFDGDLDPRTTYNEDYKPNDLSNKIYFPDDQLINGAKGESTVLKNPPNAPGNMNTTYRRDYVKYDDKMCKLRKWLNARGMRYLVI

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.