Scaffold Ga0209992_10126398

Overview

Basic Information

• Taxon OID: 3300024344
• Scaffold ID: Ga0209992_10126398
• Source Dataset Name: Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1128
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Kolumbo volcano, Aegean Sea
• Coordinates
  • Lat. (^o): 36.5264
  • Long. (^o): 25.4868
  • Depth (m): 470

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013822	Metagenome	268	Y
F019393	Metagenome	230	Y
F048575	Metagenome	148	N
F083382	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209992_101263982	F083382	GGA	MPEKIKDRDTLVSVDDAGDVAKKEYESYIKRQEKDVVDDLDNQYYSEGEQYE
Ga0209992_101263983	F019393	GGAG	MYSELRTYTSIPEFIQAHEGLWHMLDAKYKKLDKETVLIDNTKWKLVKGNMTCLKK
Ga0209992_101263984	F048575	AGGA	MATLQNSLILDEEYEYEVSVLDLWKVSGEEDPYSAIHLAMNTLRYPNPNVPDEEIEEHLSELWDERWSEYYV
Ga0209992_101263985	F013822	AGTAGG	MGMTEKELLRKNVRELQLQLRDAHIRIKELNEKCDELSKRLGLEKEFTTSDGWAMPVENPDATHIKERK