Scaffold Ga0209992_10108650

Overview

Basic Information

• Taxon OID: 3300024344
• Scaffold ID: Ga0209992_10108650
• Source Dataset Name: Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1237
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Kolumbo volcano, Aegean Sea
• Coordinates
  • Lat. (^o): 36.5264
  • Long. (^o): 25.4868
  • Depth (m): 470

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002078	Metagenome / Metatranscriptome	596	Y
F013820	Metagenome / Metatranscriptome	268	Y
F022754	Metagenome / Metatranscriptome	213	Y
F048916	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209992_101086501	F013820	N/A	YTMIKTVIDFVDKMMPGHKTYAIMLIGIAMMVCQMMGYHQFDQEAWGVLGIGGAATWKMGQDRKKK
Ga0209992_101086502	F022754	N/A	VNELVIAIMLVIPSPYKMVNWTVNQVPTQIQLIHKSGLEVSYNASPVSCSFRPRNNKEMIFKSSETDCYAVYDLSSPTFIRHPDHWHPVEPPKSLKMNVGD
Ga0209992_101086503	F002078	AGGAG	MDIASMFEGQGWFEIAGQVVLVFTALTGALPDKFVQKIPILSTVWPIFNWLAGNVFNNINHPKGMAASADVEKEIDEAKAKVRARSGMPDVLDGM
Ga0209992_101086504	F048916	GAG	MKQKLKLGLAAVCLTFLTGCSSMGILSELAAPVANFGLGLYNADTYYSKECAWYEEVRMSQDTKQWLLQNNPPPIVSEDLAQVAKNNDIYKQVCDPKPEEE