Scaffold Ga0209992_10052548

Overview

Basic Information

• Taxon OID: 3300024344
• Scaffold ID: Ga0209992_10052548
• Source Dataset Name: Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1944
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Kolumbo volcano, Aegean Sea
• Coordinates
  • Lat. (^o): 36.5264
  • Long. (^o): 25.4868
  • Depth (m): 470

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005580	Metagenome	396	Y
F014809	Metagenome	260	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209992_100525483	F014809	AGGAG	MATTITRTFDSTPTDQTYFSLTDNMSSSNLGNIQVPDGATRISRVDFTFACFNPKGYEVVCRLSGSNMSEQNFTLMGVDGDGTADSGIVNTSGSCDVAFPVTGVNNIDLQVAIQYASGGSATASSGAVTLYFE
Ga0209992_100525484	F005580	AGGAG	MKRTIPHPSVTGMASGLAIASYLNQGPIVSTGMAGISARADGVIKDITDGELGKAFGTLSNNAIKMIGSDSGRKTLVGASLVAMAGAFARKQFPNLKLGGSKLYFRV